Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F05
         (1049 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q07020 Cluster: 60S ribosomal protein L18; n=124; Eukar...    38   0.57 
UniRef50_UPI000155D3ED Cluster: PREDICTED: similar to ribosomal ...    37   1.00 

>UniRef50_Q07020 Cluster: 60S ribosomal protein L18; n=124;
           Eukaryota|Rep: 60S ribosomal protein L18 - Homo sapiens
           (Human)
          Length = 188

 Score = 37.5 bits (83), Expect = 0.57
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +2

Query: 110 MGIDMNHKHXRXXRXXEVXXQDIXLRVXCXXLQIIXXDVXXXKYNXIVXRXLXMSXISRP 289
           MG+D+ H   R  R  E   QDI LR+     + +        +N +V + L MS  +RP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRT-NSTFNQVVLKRLFMSRTNRP 59

Query: 290 P 292
           P
Sbjct: 60  P 60


>UniRef50_UPI000155D3ED Cluster: PREDICTED: similar to ribosomal
           protein L18; n=1; Ornithorhynchus anatinus|Rep:
           PREDICTED: similar to ribosomal protein L18 -
           Ornithorhynchus anatinus
          Length = 188

 Score = 36.7 bits (81), Expect = 1.00
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 110 MGIDMNHKHXRXXRXXEVXXQDIXLRVXCXXLQIIXXDVXXXKYNXIVXRXLXMSXISRP 289
           +G+D+ H   R  R  E   QDI LR+     + +        +N +V + L MS  +RP
Sbjct: 110 LGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRT-NSSFNKVVLKRLFMSRTNRP 168

Query: 290 P 292
           P
Sbjct: 169 P 169


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,886,779
Number of Sequences: 1657284
Number of extensions: 2877596
Number of successful extensions: 2899
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2863
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 101246329096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)