Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F05
         (1049 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021743-1|AAH21743.1|  188|Homo sapiens ribosomal protein L18 p...    38   0.046
L11566-1|AAA16329.1|  188|Homo sapiens ribosomal protein L18 pro...    38   0.081
BC009708-1|AAH09708.1|  188|Homo sapiens ribosomal protein L18 p...    38   0.081
BC000374-1|AAH00374.1|  188|Homo sapiens ribosomal protein L18 p...    38   0.081
AB061825-1|BAB79463.1|  188|Homo sapiens ribosomal protein L18 p...    38   0.081

>BC021743-1|AAH21743.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 38.3 bits (85), Expect = 0.046
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +2

Query: 110 MGIDMNHKHXRXXRXXEVXXQDIXLRVXCXXLQIIXXDVXXXKYNXIVXRXLXMSXISRP 289
           MG+D+ H   R  R  E   QDI LR+     + +        +N +V + L MS  +RP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRT-NSTFNQVVLKRLFMSRTNRP 59

Query: 290 PXXCVS 307
           P  C+S
Sbjct: 60  P-LCLS 64


>L11566-1|AAA16329.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 37.5 bits (83), Expect = 0.081
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +2

Query: 110 MGIDMNHKHXRXXRXXEVXXQDIXLRVXCXXLQIIXXDVXXXKYNXIVXRXLXMSXISRP 289
           MG+D+ H   R  R  E   QDI LR+     + +        +N +V + L MS  +RP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRT-NSTFNQVVLKRLFMSRTNRP 59

Query: 290 P 292
           P
Sbjct: 60  P 60


>BC009708-1|AAH09708.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 37.5 bits (83), Expect = 0.081
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +2

Query: 110 MGIDMNHKHXRXXRXXEVXXQDIXLRVXCXXLQIIXXDVXXXKYNXIVXRXLXMSXISRP 289
           MG+D+ H   R  R  E   QDI LR+     + +        +N +V + L MS  +RP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRT-NSTFNQVVLKRLFMSRTNRP 59

Query: 290 P 292
           P
Sbjct: 60  P 60


>BC000374-1|AAH00374.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 37.5 bits (83), Expect = 0.081
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +2

Query: 110 MGIDMNHKHXRXXRXXEVXXQDIXLRVXCXXLQIIXXDVXXXKYNXIVXRXLXMSXISRP 289
           MG+D+ H   R  R  E   QDI LR+     + +        +N +V + L MS  +RP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRT-NSTFNQVVLKRLFMSRTNRP 59

Query: 290 P 292
           P
Sbjct: 60  P 60


>AB061825-1|BAB79463.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 37.5 bits (83), Expect = 0.081
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +2

Query: 110 MGIDMNHKHXRXXRXXEVXXQDIXLRVXCXXLQIIXXDVXXXKYNXIVXRXLXMSXISRP 289
           MG+D+ H   R  R  E   QDI LR+     + +        +N +V + L MS  +RP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRT-NSTFNQVVLKRLFMSRTNRP 59

Query: 290 P 292
           P
Sbjct: 60  P 60


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,430,127
Number of Sequences: 237096
Number of extensions: 555132
Number of successful extensions: 357
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14263098108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)