Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_F04
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0215 + 12722394-12722581,12722992-12723071,12723315-127235...    31   1.5  

>04_03_0215 +
           12722394-12722581,12722992-12723071,12723315-12723532,
           12724084-12724168,12724679-12724725,12725378-12725536
          Length = 258

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +2

Query: 23  YRESLRFDSVTCNSKDTIEMQKLIIFALVVLCVGSEAKTFTRCGLVHELRKHGFEENLMR 202
           YRE +RFD +   S      Q++++F  V L   + +K       V+ L       N+MR
Sbjct: 127 YREGIRFDKINDESGYYFLTQRILLFTFVYLF--NRSKEQDAKVTVNSLHPGAVVTNIMR 184

Query: 203 NW 208
           +W
Sbjct: 185 HW 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,620,189
Number of Sequences: 37544
Number of extensions: 293488
Number of successful extensions: 748
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)