Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_E24
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratas...    67   3e-12
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    29   1.1  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    28   1.9  

>SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 24/44 (54%), Positives = 38/44 (86%)
 Frame = +3

Query: 267 ALLAEKMDHHPEWFNVYNKLQVTLSSHDVNGLSKRDIKMASFMD 398
           AL A++++HHPEW NVYNK+ +TL++HD  GL+++D+K+A F+D
Sbjct: 47  ALRAQQLNHHPEWTNVYNKVDITLTTHDTKGLTEKDLKLAEFID 90



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 128 LNQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMT 259
           +N   R   L    ++ W +Q     + K F+FKNF EA+GFM+
Sbjct: 1   MNTSARLLALVSKSKNNWILQQGDTKLFKSFRFKNFIEAWGFMS 44


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 71  VRYASVSSTTPSKRKMADKLNQEERTTELKPLLESGW 181
           + Y++ S+   S++  AD L    + TELKP    GW
Sbjct: 37  ILYSNRSACYASEKDYADALKDATKCTELKPDWAKGW 73


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 86  VSSTTPSKRKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKE 217
           +S+    K++  DKL QE +  ELK + ES  K++   + +  +
Sbjct: 64  LSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDD 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,913
Number of Sequences: 5004
Number of extensions: 54271
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)