Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_E23
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    77   3e-15
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    27   4.7  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 37/72 (51%), Positives = 44/72 (61%)
 Frame = +1

Query: 316 LXKYMSSXPVVPMVWEGLNVVKTGXXFYKXPLXPTXSXPGTIRGXLWLQLGRNIIHGSDT 495
           L  +M+S PV  M+WEG   VKTG         P  S PGTIRG   + LGRN+ HGSD+
Sbjct: 63  LVGFMASGPVCAMIWEGKQAVKTGRLMLGAS-NPLDSAPGTIRGDYGIDLGRNVCHGSDS 121

Query: 496 VESAXXEIXLWF 531
           +ESA  EI LWF
Sbjct: 122 IESANREIKLWF 133



 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 24/57 (42%), Positives = 34/57 (59%)
 Frame = +3

Query: 138 ERTFIMVXPDGVQRGLVGTIIERFEXXXXXXXXXXXXWPSEELLXQHYSDXASRPFF 308
           E+TFI V PD VQRGL+G II +FE             PS +L+ +HY++   +PF+
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFY 60


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 232 TXLKPFFSKRSIMVPTRPRCTPSGLT 155
           T  KPF +KRS ++P RP  T   L+
Sbjct: 509 TIPKPFVNKRSKVLPLRPSVTHDNLS 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,706,595
Number of Sequences: 5004
Number of extensions: 21475
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)