Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_E21
         (1373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.49 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   2.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   6.1  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 1204 LSXVPPXXXPPPXRXPSXXQXXPPXXXPXPPPP 1302
            ++ +PP   PPP   P      PP   P PPPP
Sbjct: 1    MASLPPGNPPPPPPPPG---FEPPSQPPPPPPP 30


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/67 (25%), Positives = 17/67 (25%)
 Frame = +1

Query: 1102 PXXQXXPRKXCXXPXPXHXVPSXXXXXPXXXXXXLSXVPPXXXPPPXRXPSXXQXXPPXX 1281
            P     PR     P P    P      P          P      P   PS     PP  
Sbjct: 139  PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198

Query: 1282 XPXPPPP 1302
               PPPP
Sbjct: 199  PKVPPPP 205


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 1216 PPXXXPPPXRXPSXXQXXPPXXXPXPPPPP*TAV 1317
            PP   PP    P+     P    P PPPPP  AV
Sbjct: 168  PPSFQPPSAAAPATS--LPSDYNPPPPPPPPPAV 199



 Score = 23.0 bits (47), Expect(2) = 5.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 1285 PXPPPPP*TAVXXHXXXXSXLTSPS 1359
            P PPPPP   +       S L  PS
Sbjct: 236  PAPPPPPPPTLPPQSTNTSQLPMPS 260



 Score = 22.2 bits (45), Expect(2) = 5.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 1273 PXXXPXPPPPP 1305
            P   P PPPPP
Sbjct: 234  PLPAPPPPPPP 244


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 1207 SXVPPXXXPPPXRXPSXXQXXPPXXXPXPPPPP 1305
            S +PP   PPP    +     PP     PPPPP
Sbjct: 334  SSLPPPP-PPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 26.6 bits (56), Expect = 8.0
 Identities = 16/54 (29%), Positives = 16/54 (29%)
 Frame = +2

Query: 695 ITLXPXXPXXPTPNPXRXKPXTXXXPPXKXEXSXXXXSXXQXXXSPXRPAPXXP 856
           I L P     P P P R  P T   PP                  P R AP  P
Sbjct: 351 IPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP 404


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
 Frame = +1

Query: 1219 PXXXPPPXRXPSXXQXXP-PXXXPXPPPPP 1305
            P   PPP   P      P P   P  PPPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,585
Number of Sequences: 5004
Number of extensions: 10614
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 759101996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)