Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_E19
(846 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT006631-1|AAP35277.1| 342|Homo sapiens sorting nexin 15 protein. 32 3.0
BC014520-1|AAH14520.1| 342|Homo sapiens sorting nexin 15 protein. 32 3.0
BC012767-1|AAH12767.1| 342|Homo sapiens sorting nexin 15 protein. 32 3.0
BC009897-1|AAH09897.1| 342|Homo sapiens sorting nexin 15 protein. 32 3.0
AL354775-1|CAI12730.1| 276|Homo sapiens protein ( Human DNA seq... 32 3.0
AF175268-1|AAF89956.1| 255|Homo sapiens sorting nexin 15A protein. 32 3.0
AF175267-1|AAF89955.1| 342|Homo sapiens sorting nexin 15 protein. 32 3.0
AF001435-1|AAB81205.1| 152|Homo sapiens unknown protein. 32 3.0
AB209439-1|BAD92676.1| 267|Homo sapiens sorting nexin 15 isofor... 32 3.0
X98893-1|CAA67398.1| 589|Homo sapiens hTAFII68 protein. 30 9.2
U51334-1|AAC50932.1| 592|Homo sapiens putative RNA binding prot... 30 9.2
BC046099-1|AAH46099.2| 592|Homo sapiens TAF15 RNA polymerase II... 30 9.2
AY197697-1|AAO13485.1| 589|Homo sapiens TAF15 RNA polymerase II... 30 9.2
AB010067-2|BAA33812.1| 589|Homo sapiens RBP56/hTAFII68 protein. 30 9.2
AB010067-1|BAA33811.1| 592|Homo sapiens RBP56/hTAFII68 protein. 30 9.2
>BT006631-1|AAP35277.1| 342|Homo sapiens sorting nexin 15 protein.
Length = 342
Score = 31.9 bits (69), Expect = 3.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 158 PPGYAEKYPITSQFSKSV*HPRDIHDFVTWDKEMGGGKVFGTLGESDQGLF 310
P GY E Y +T+QF P D+ + V W + K+ G L + + LF
Sbjct: 22 PKGYTE-YKVTAQFISKK-DPEDVKEVVVWKRYSDFRKLHGDLAYTHRNLF 70
>BC014520-1|AAH14520.1| 342|Homo sapiens sorting nexin 15 protein.
Length = 342
Score = 31.9 bits (69), Expect = 3.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 158 PPGYAEKYPITSQFSKSV*HPRDIHDFVTWDKEMGGGKVFGTLGESDQGLF 310
P GY E Y +T+QF P D+ + V W + K+ G L + + LF
Sbjct: 22 PKGYTE-YKVTAQFISKK-DPEDVKEVVVWKRYSDFRKLHGDLAYTHRNLF 70
>BC012767-1|AAH12767.1| 342|Homo sapiens sorting nexin 15 protein.
Length = 342
Score = 31.9 bits (69), Expect = 3.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 158 PPGYAEKYPITSQFSKSV*HPRDIHDFVTWDKEMGGGKVFGTLGESDQGLF 310
P GY E Y +T+QF P D+ + V W + K+ G L + + LF
Sbjct: 22 PKGYTE-YKVTAQFISKK-DPEDVKEVVVWKRYSDFRKLHGDLAYTHRNLF 70
>BC009897-1|AAH09897.1| 342|Homo sapiens sorting nexin 15 protein.
Length = 342
Score = 31.9 bits (69), Expect = 3.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 158 PPGYAEKYPITSQFSKSV*HPRDIHDFVTWDKEMGGGKVFGTLGESDQGLF 310
P GY E Y +T+QF P D+ + V W + K+ G L + + LF
Sbjct: 22 PKGYTE-YKVTAQFISKK-DPEDVKEVVVWKRYSDFRKLHGDLAYTHRNLF 70
>AL354775-1|CAI12730.1| 276|Homo sapiens protein ( Human DNA
sequence from clone RP11-223F20 on chromosome 13
Contains a novel heterogeneous nuclear ribonucleoprotein
family A protein and).
Length = 276
Score = 31.9 bits (69), Expect = 3.0
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 260 GGGKVFGTLGESDQGLFGK--GGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGGR 427
GG +G G +G +G+ GGYNR F D G Y +R G GG T YG +
Sbjct: 141 GGRGGYGGGGGGSRGSYGRGDGGYNR-FGRDGGNYGGGPGYSSRG-GYGGGGTGYGNQ 196
>AF175268-1|AAF89956.1| 255|Homo sapiens sorting nexin 15A protein.
Length = 255
Score = 31.9 bits (69), Expect = 3.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 158 PPGYAEKYPITSQFSKSV*HPRDIHDFVTWDKEMGGGKVFGTLGESDQGLF 310
P GY E Y +T+QF P D+ + V W + K+ G L + + LF
Sbjct: 22 PKGYTE-YKVTAQFISKK-DPEDVKEVVVWKRYSDFRKLHGDLAYTHRNLF 70
>AF175267-1|AAF89955.1| 342|Homo sapiens sorting nexin 15 protein.
Length = 342
Score = 31.9 bits (69), Expect = 3.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 158 PPGYAEKYPITSQFSKSV*HPRDIHDFVTWDKEMGGGKVFGTLGESDQGLF 310
P GY E Y +T+QF P D+ + V W + K+ G L + + LF
Sbjct: 22 PKGYTE-YKVTAQFISKK-DPEDVKEVVVWKRYSDFRKLHGDLAYTHRNLF 70
>AF001435-1|AAB81205.1| 152|Homo sapiens unknown protein.
Length = 152
Score = 31.9 bits (69), Expect = 3.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 158 PPGYAEKYPITSQFSKSV*HPRDIHDFVTWDKEMGGGKVFGTLGESDQGLF 310
P GY E Y +T+QF P D+ + V W + K+ G L + + LF
Sbjct: 22 PKGYTE-YKVTAQFISKK-DPEDVKEVVVWKRYSDFRKLHGDLAYTHRNLF 70
>AB209439-1|BAD92676.1| 267|Homo sapiens sorting nexin 15 isoform B
variant protein.
Length = 267
Score = 31.9 bits (69), Expect = 3.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 158 PPGYAEKYPITSQFSKSV*HPRDIHDFVTWDKEMGGGKVFGTLGESDQGLF 310
P GY E Y +T+QF P D+ + V W + K+ G L + + LF
Sbjct: 21 PKGYTE-YKVTAQFISKK-DPEDVKEVVVWKRYSDFRKLHGDLAYTHRNLF 69
>X98893-1|CAA67398.1| 589|Homo sapiens hTAFII68 protein.
Length = 589
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 260 GGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYG-TRVLGPGGDSTSYGGRLDW 436
GG + G G G G GG + DR +G YG R G GGD YGG++
Sbjct: 520 GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR---SGGGYGGDRGGGYGGDRGGYGGKMGG 576
Query: 437 ANE 445
N+
Sbjct: 577 RND 579
>U51334-1|AAC50932.1| 592|Homo sapiens putative RNA binding protein
RBP56 protein.
Length = 592
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 260 GGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYG-TRVLGPGGDSTSYGGRLDW 436
GG + G G G G GG + DR +G YG R G GGD YGG++
Sbjct: 523 GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR---SGGGYGGDRGGGYGGDRGGYGGKMGG 579
Query: 437 ANE 445
N+
Sbjct: 580 RND 582
>BC046099-1|AAH46099.2| 592|Homo sapiens TAF15 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 68kD
protein.
Length = 592
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 260 GGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYG-TRVLGPGGDSTSYGGRLDW 436
GG + G G G G GG + DR +G YG R G GGD YGG++
Sbjct: 523 GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR---SGGGYGGDRGGGYGGDRGGYGGKMGG 579
Query: 437 ANE 445
N+
Sbjct: 580 RND 582
>AY197697-1|AAO13485.1| 589|Homo sapiens TAF15 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 68kD
protein.
Length = 589
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 260 GGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYG-TRVLGPGGDSTSYGGRLDW 436
GG + G G G G GG + DR +G YG R G GGD YGG++
Sbjct: 520 GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR---SGGGYGGDRGGGYGGDRGGYGGKMGG 576
Query: 437 ANE 445
N+
Sbjct: 577 RND 579
>AB010067-2|BAA33812.1| 589|Homo sapiens RBP56/hTAFII68 protein.
Length = 589
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 260 GGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYG-TRVLGPGGDSTSYGGRLDW 436
GG + G G G G GG + DR +G YG R G GGD YGG++
Sbjct: 520 GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR---SGGGYGGDRGGGYGGDRGGYGGKMGG 576
Query: 437 ANE 445
N+
Sbjct: 577 RND 579
>AB010067-1|BAA33811.1| 592|Homo sapiens RBP56/hTAFII68 protein.
Length = 592
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 260 GGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYG-TRVLGPGGDSTSYGGRLDW 436
GG + G G G G GG + DR +G YG R G GGD YGG++
Sbjct: 523 GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR---SGGGYGGDRGGGYGGDRGGYGGKMGG 579
Query: 437 ANE 445
N+
Sbjct: 580 RND 582
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,113,457
Number of Sequences: 237096
Number of extensions: 2044247
Number of successful extensions: 4528
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4524
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10705443456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -