Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_E18
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    29   0.99 
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    27   4.0  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 123 VSNIFGKHFVKTMHYAILQNYLVIKKNLKEF 31
           + N +G H +  + + IL+N+    KN+K+F
Sbjct: 536 ILNSYGNHVLNRIQHDILENHFCCLKNVKDF 566


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 133 RNSTLNKNYGFLRNFSLTASKNDIVKIQS 219
           ++S LN + GFL NFSL  S +   K+ S
Sbjct: 580 QDSQLNASSGFLTNFSLKDSTDRFYKVLS 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,115
Number of Sequences: 5004
Number of extensions: 25448
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)