Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_E15
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...   143   3e-35
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   3.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   3.4  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   4.5  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   4.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.0  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   6.0  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.9  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   7.9  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score =  143 bits (346), Expect = 3e-35
 Identities = 75/158 (47%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
 Frame = +2

Query: 275 RLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAXTIRNCREAEKSYSAKL 454
           R + IICTIGP S NV  L K+ + GMN+ RMNFSHGS+EYH   I N R+A  +     
Sbjct: 26  RRTSIICTIGPKSNNVETLCKLRDAGMNIVRMNFSHGSYEYHQSVIDNARKASAT----- 80

Query: 455 GSPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLTTSSDYQEKGNADTIYVDYK 634
              F LAIALDTKGPEIRTGL  GG   +  +  G  +  TT   Y EK N   +Y+DYK
Sbjct: 81  NPLFPLAIALDTKGPEIRTGLTVGG--TDYPISSGHEMIFTTDDAYAEKCNDKVMYIDYK 138

Query: 635 NITNVVKPGNRIXIDDGLISI-ICQSVSADXLTCTIXN 745
           NIT V++PG  I +DDG++S  + + V    L   + N
Sbjct: 139 NITKVIQPGRIIYVDDGILSFTVIEKVDDKNLKVRVNN 176


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 185 GAVEKPTVANVGSQLQHMCGLDIDSKSSYIRLSGIICTIG 304
           G + + ++      L+ +   D+D+K +YI+LS    T+G
Sbjct: 15  GTLNESSIYKTYQILESLNPKDVDTKENYIKLSNTFSTLG 54


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 64   VETCIQSDLNCVNYILLCVIINLRNIKQNESYCETLQ 174
            V   I S  +  NY+L+C+ + L   K   +YCE+ Q
Sbjct: 1212 VREIISSSNSFKNYLLVCLRMLLEVAKNVNTYCESRQ 1248


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 561 SPFFSSTSAEPPPSKSPVLISGPLVSNAMAKEKGEPSL 448
           SP   ST+A  P  K+P   +  L+S   +KEK  PS+
Sbjct: 305 SPLHQSTTANHP-EKTPSRAAASLLSILDSKEKNTPSI 341


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 43/187 (22%), Positives = 73/187 (39%), Gaps = 3/187 (1%)
 Frame = +2

Query: 167 LYNDKAGAVEKPTVANVGSQLQHMCGLDIDSKSSYIRLSGI--ICTIGPASRNVAVLE-K 337
           L+ +   + E P+V       +H+  +   S SS  R+S    I  I  A  ++AV    
Sbjct: 131 LHENSISSKESPSVTTS----KHVATITKPSTSSIARMSSNARIAAIPRAKSSMAVRSPS 186

Query: 338 MMETGMNVARMNFSHGSHEYHAXTIRNCREAEKSYSAKLGSPFSLAIALDTKGPEIRTGL 517
            +  G NV        +    +  +++    +K  ++   S  SL  +   + P  RT  
Sbjct: 187 RLGNGPNVRSPKVGFNAKSDDSPVVKSPGSNDKPSASPRISVRSLGNSSVVR-PPTRTST 245

Query: 518 LEGGGSAEVELKKGETIKLTTSSDYQEKGNADTIYVDYKNITNVVKPGNRIXIDDGLISI 697
                   V    G   K +TS   + K NA T  V   +    V+PG+RI  ++   + 
Sbjct: 246 TRPLSRVNVTNASGSISKNSTSPS-KVKVNASTKIVRPVSAAQTVRPGSRIFRENSASNT 304

Query: 698 ICQSVSA 718
              +VSA
Sbjct: 305 QRPNVSA 311


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 247  RH*LQVFVHSSLGNNLYYWTGIP*CSCAR 333
            RH L++ V   L  N+Y WT +P C  +R
Sbjct: 2344 RHFLKLVV---LWKNIYVWTNVPDCDISR 2369


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 26/93 (27%), Positives = 39/93 (41%)
 Frame = -3

Query: 757 EHTSVXNGTXKXVSADRLTDDRDEAIIDXDSVSWLHDIRYVLVVHVNCISIAFLLIIRTC 578
           + T   +G  K V A  +T + D ++    S+S   D+        + +S  F  ++R  
Sbjct: 475 DQTFENDGASKVVPAGNITLNSDNSL--HHSISESEDLS-----SASTLSDYFRFVLRVG 527

Query: 577 RQLYSLSLLQFDFS*AAAFQEPSSDLRSFSVQC 479
           + LY    L FD S   A  E    LRS  V C
Sbjct: 528 KSLYYAGELSFDISKLKAETEHQQLLRSL-VSC 559


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
 Frame = -1

Query: 531 PP--PSKSPVLISGPLVSNAMAKEKGEPSLAL*LFSASRQLRMVXAWYSWEPCEKFILAT 358
           PP  PS+ P + + P     +     EPS+   L      LR      + +P  K  L T
Sbjct: 430 PPKHPSRQPTVRATPSTGKQIEPPNDEPSIGNELLPLFESLRFENRKTTSKPKAKKTLVT 489

Query: 357 FIPVSIIFSSTATLRDAGPIVQI--IPER 277
            IP     +S   + D    + +  IPE+
Sbjct: 490 SIPTKPHQASVEKVYDLNSKINLKNIPEQ 518


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 561 SPFFSSTSAEPPPSKSP 511
           SP FSS+S  PPP   P
Sbjct: 231 SPIFSSSSTPPPPPPRP 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,541
Number of Sequences: 5004
Number of extensions: 59920
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)