Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_E12
         (951 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.030
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect(2) = 0.030
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 779  PPPXPPPPPXG 811
            PPP PPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 782  PPXPPPPPXGXXA 820
            PP PPPPP    A
Sbjct: 1355 PPPPPPPPSSGQA 1367



 Score = 23.4 bits (48), Expect(2) = 0.030
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 749  QXRPPPPPXXPPP 787
            Q +PPPPP  PPP
Sbjct: 1352 QQQPPPPP--PPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect(2) = 1.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 770  PXXPPPXPPPPP 805
            P    P PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863



 Score = 21.0 bits (42), Expect(2) = 1.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 869  PPPPPP 886
            PPPPPP
Sbjct: 1859 PPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 779 PPPXPPPPPXGXXAP 823
           P P PPPPP     P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 767 PPXXPPPXPPPPPXG 811
           PP   PP PPP   G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 761 PPPPXXPPPXP 793
           PP P  PPP P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 764 PPPXXPPPXPP 796
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
 Frame = +2

Query: 758 PPPPPXXPPPXPPP--PP 805
           PP P   PPP  PP  PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 11/28 (39%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
 Frame = +2

Query: 758 PPPPPXXPPPXPP--PPPXGXXAPPXGG 835
           P P P   P  P    PP     PP GG
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGG 50


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 825 GGAXXPXGGGGGXGGGXXGGGGG 757
           GG      GG    G   GGGGG
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGG 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,098
Number of Sequences: 438
Number of extensions: 5192
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)