Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_E07
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.003
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.12
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.87
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 2.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.1
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 26 8.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.1 bits (82), Expect = 0.003
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = +1
Query: 508 LVHTPXXPPPXPPXPXPXXXPXPXXXPLXRVNSHPPPXNHP-LDXFRXPPHPKXPXXXNA 684
L+ +P PPP P P P P P + PPP P + PP P P +A
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787
Query: 685 XFGQXPXTAXRLXPYPII 738
+ A + P P I
Sbjct: 788 GGSRYYAPAPQAEPEPKI 805
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +1
Query: 772 PPPHXXXSTXXXGPAXRXPPPXXKPPHPPXPXXPP 876
P P + GP PPP PP P PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.12
Identities = 30/117 (25%), Positives = 33/117 (28%), Gaps = 2/117 (1%)
Frame = +1
Query: 532 PPXPPXPXPXXXPXPXXXPLXRVNSHPPPXNHPLDXFRXPPHPKXPXXXNAXFGQXPXTA 711
PP PP P P R PPP R PP + P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 712 XRLXPYPIIPRQ*XXLTTNTPPPHXXXSTXXXGPAXRXP--PPXXKPPHPPXPXXPP 876
R P +P T+TPP S P P PP P P PP
Sbjct: 397 GR--SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Score = 30.3 bits (65), Expect = 0.38
Identities = 33/120 (27%), Positives = 37/120 (30%), Gaps = 4/120 (3%)
Frame = +1
Query: 529 PPPXPPXPXPXXXPXPXXXPLXRVNSHPPPXNHPLDXFRXPPHPKXPXXXNAXFGQXPXT 708
PPP PP P P R S+PP P P P NA P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPA---PPPAIPGRSAPALPPLGNASRTSTPPV 417
Query: 709 AXRLXPYPIIPRQ*XXLTTNTPP--PHXXXSTXXXGP-AXRXPP-PXXKPPHPPXPXXPP 876
P + P L + PP P + P A PP P P PP P P
Sbjct: 418 P---TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Score = 28.7 bits (61), Expect = 1.2
Identities = 30/101 (29%), Positives = 31/101 (30%)
Frame = +1
Query: 574 PXXXPLXRVNSHPPPXNHPLDXFRXPPHPKXPXXXNAXFGQXPXTAXRLXPYPIIPRQ*X 753
P P R N PP + PP P P A P R P P PR
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG-RSAPPPPPPRS-A 369
Query: 754 XLTTNTPPPHXXXSTXXXGPAXRXPPPXXKPPHPPXPXXPP 876
T PPP PA PPP P P PP
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPA---PPPAI--PGRSAPALPP 405
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect = 0.87
Identities = 27/102 (26%), Positives = 32/102 (31%), Gaps = 3/102 (2%)
Frame = +1
Query: 568 PXPXXXPLXRVNSHPPPXNHPLDXFRX--PPHPKXPXXXNAXFGQXPXTAXRLXPYPIIP 741
P P P V N P D + P+ P P A P P +P
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQAD-PLPAPPPPPPPTLP 247
Query: 742 RQ*XXLTTNTPP-PHXXXSTXXXGPAXRXPPPXXKPPHPPXP 864
Q +TNT P + G PPP P PP P
Sbjct: 248 PQ----STNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRP 285
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.5
Identities = 25/108 (23%), Positives = 33/108 (30%), Gaps = 1/108 (0%)
Frame = +1
Query: 535 PXPPXPXPXXXPXPXXXPLXRVNSHPPPXNHPLDXFRXPPHPKXPXXXNAXFGQXPXTAX 714
P P P P P L S PP +HP P P A P +
Sbjct: 961 PRPAAPPSIPPPLPVSNILSSPTSEPP-KDHPPSAPLSKPVSTSPAAPLARVPPVPKLSS 1019
Query: 715 RLXPYPIIPRQ*XXL-TTNTPPPHXXXSTXXXGPAXRXPPPXXKPPHP 855
+ P P+ + +T PP ++ P P PP P
Sbjct: 1020 KAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067
Score = 26.6 bits (56), Expect = 4.7
Identities = 31/121 (25%), Positives = 32/121 (26%), Gaps = 2/121 (1%)
Frame = +1
Query: 520 PXXPPPX--PPXPXPXXXPXPXXXPLXRVNSHPPPXNHPLDXFRXPPHPKXPXXXNAXFG 693
P P P PP P P P P V P P P P P A
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 694 QXPXTAXRLXPYPIIPRQ*XXLTTNTPPPHXXXSTXXXGPAXRXPPPXXKPPHPPXPXXP 873
P A P P + PP S P P PP PP P
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP----KPAAGVPPVPPPSEAP 1198
Query: 874 P 876
P
Sbjct: 1199 P 1199
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 811 PAXRXPPPXXKPPHPPXPXXPP 876
P PPP +PP P P PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = -2
Query: 668 GXLGWGGXRXXSRGWXSGGGCELTLXXGXSXGXGXXXGXGXGGXGGGXXG 519
G G+GG R +RG GG G G G G G GG GG G
Sbjct: 24 GRGGFGGGRGGARGGGRGGA------RGGRGGRGGARG-GRGGSSGGRGG 66
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = -2
Query: 668 GXLGWGGXRXXSRGWXSGGGCELTLXXGXSXGXGXXXGXGXGGXGGGXXG 519
G G G G GG G G G G GG GGG G
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGG 260
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.1
Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Frame = +1
Query: 520 PXXPPPXPP-XPXPXXXPXPXXXPLXRVNSHPPPXNH-PLDXFRXPPHP-KXPXXXNAXF 690
P PP PP P P P R +S PP H P P P + P +A
Sbjct: 191 PSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSASV 250
Query: 691 GQXPXTAXRLXPYP 732
P ++ L P
Sbjct: 251 PPVPPSSYVLQQRP 264
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 76 YSAAXCLNVRG*IYINLQ*TSQRSYPSSSL 165
Y+AA LN++ +Y+NL + + P+S+L
Sbjct: 63 YNAADALNLQFLLYLNLDMSEMSTVPASTL 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,219
Number of Sequences: 5004
Number of extensions: 45571
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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