Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_E06
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   4.5  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   6.0  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   7.9  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 214  SSLLVWTCSPRLLRVLVATYPRHLRRQLQAT 306
            +S L+W   P  +R  + T+   +RRQL+AT
Sbjct: 1340 NSTLLWERHPIAMRSAIKTHNTIMRRQLRAT 1370


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
            Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 197  ILVGNITHITTKRYVFLGTLLQKYLKHSLQ*ILH 96
            +L   IT  T + Y+F+G +  + LKH +   +H
Sbjct: 1019 MLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMH 1052


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 623 HRAPRNDRWKEPEPRAEERSNSRWPS 700
           + APR  R+   E   +ERS SR P+
Sbjct: 37  NEAPRESRYYRKEEHLQERSRSRSPA 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,715
Number of Sequences: 5004
Number of extensions: 52658
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)