Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_E06
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   8.3  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 115 VYNEFCTNTNSQNHKKDSISH 53
           V+  + +  N +  KKDSISH
Sbjct: 441 VHTSYKSGLNLEQEKKDSISH 461


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 260 WSLHTPXICVGSCRQPLIK 316
           W++ TP ICVG     +IK
Sbjct: 495 WTITTPAICVGVFTFNIIK 513


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 260 WSLHTPXICVGSCRQPLIK 316
           W++ TP ICVG     +IK
Sbjct: 548 WTITTPAICVGVFTFNIIK 566


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 581 DAGLATCDVRRIMNHRAPRN 640
           DAG+ TC  R    H A R+
Sbjct: 583 DAGVYTCSARNKQGHSARRS 602


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 581 DAGLATCDVRRIMNHRAPRN 640
           DAG+ TC  R    H A R+
Sbjct: 583 DAGVYTCSARNKQGHSARRS 602


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 389 PPNDERLSRDS---LGRVSKLERLDSSP*SE 306
           PPNDE +  DS    G +++   LDS+  S+
Sbjct: 195 PPNDEGIETDSDRRKGSIARCWSLDSTAASD 225


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 693 QRELERSSALGSGSFQRSFRGARWFIILLTSHV 595
           +++  RSS L S  F + F    W +++++ HV
Sbjct: 548 EKKPSRSSTLVS--FLQPFSNTLWILVMVSVHV 578


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 163 SGTFFWELCSKNI*NTVYNEFCTNTNSQNHKKDS 62
           +G    E C +N  N+       NTN+ N+  ++
Sbjct: 211 AGAVVLETCQRNSNNSTITAGNANTNASNNNNNN 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,236
Number of Sequences: 438
Number of extensions: 4382
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)