Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_E04
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 73 3e-13
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 58 9e-09
12_02_0911 + 24236374-24237582 32 0.51
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348... 30 2.7
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 3.6
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 29 4.8
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 4.8
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 29 6.3
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 72.9 bits (171), Expect = 3e-13
Identities = 50/134 (37%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Frame = +2
Query: 347 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 526
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 527 RG---KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDY 697
RG +L VT L + P A+E AL LE V + + + S ND
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEK---GDALYAMELALALEKLVNEKLHN-LHSVASRCNDP 206
Query: 698 HLVDYLSGEFLXEQ 739
L D++ EFL EQ
Sbjct: 207 QLTDFVESEFLEEQ 220
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 58.0 bits (134), Expect = 9e-09
Identities = 47/123 (38%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Frame = +2
Query: 380 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 550
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 551 TDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFL 730
T L + P E G AL L + V C ND L D++ EFL
Sbjct: 194 TPLTEFDHP-----EKG-DALYGELLSACPIYVFYSMVASRC----NDPQLTDFVESEFL 243
Query: 731 XEQ 739
EQ
Sbjct: 244 EEQ 246
>12_02_0911 + 24236374-24237582
Length = 402
Score = 32.3 bits (70), Expect = 0.51
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +2
Query: 536 LTGSVTDLITYRAPANTSW--ESGASALEHA--LKLESDVTNSIREVIKTCESSFNDYHL 703
L VT+L+ R A ++GA+A + A L+L+ S +EV +H+
Sbjct: 148 LPSKVTNLLLLRLKARNQQVVDAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHV 207
Query: 704 VDYLSGEFLXEQYKG 748
D+LS EQY G
Sbjct: 208 DDFLSDACSNEQYSG 222
>02_01_0485 +
3487578-3487635,3488281-3488399,3488600-3488698,
3488795-3488851,3488954-3489109,3489227-3489311,
3489489-3489579,3489693-3489857,3489923-3490045,
3490244-3490319,3490486-3490633,3490769-3491934,
3492041-3492231,3492321-3492513
Length = 908
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 529 GQADRLRNRPHHVQGPRQHVVGERRISPRARPQAGE*R-HQQHPGGHQDLREQ 684
G + + ++P ++Q P QH P+ +PQ + HQQ P HQ +++Q
Sbjct: 502 GNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQP-QHQQMQQQ 553
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 599 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 706
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 14 PSHYRESLRFDYLVQFKVTYANRTYLFEFPANYKSPS 124
PSH +R +YLV F+++ R YL + PS
Sbjct: 375 PSHLSTHIRLEYLVSFRLSSKVRNYLLGLKGLWFHPS 411
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 407 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 523
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -2
Query: 328 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDIQKN 179
P+I G+ D + C D KE PH RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,833,395
Number of Sequences: 37544
Number of extensions: 399158
Number of successful extensions: 953
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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