Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_E02
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    42   1e-04
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ...    28   1.5  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    27   2.5  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   7.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   7.8  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 14/185 (7%)
 Frame = +1

Query: 196 LGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILT 375
           +GL  MG  +  N   KGFTV  Y+ +   ++    N      SI            +  
Sbjct: 12  IGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLAN-EAKGKSIVGAHSLEEFVSKLKK 70

Query: 376 SNKVVLDVYLGK------DGVVAHAKKGSLLIDSSTID-PNVPKQIFPIALEKGLGFTDA 534
               +L V  GK      +G+    +KG +++D      P+  ++   +A +KG+ F  +
Sbjct: 71  PRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCEELA-KKGILFVGS 129

Query: 535 PVSGGVMGAXNATLAFMAGGRKEDFERSLPLLXVMGAKQFH---C----GQIGSGXVAKL 693
            VSGG  GA     + M GG    + R  P+   + AK  +   C    G+ G+G   K+
Sbjct: 130 GVSGGEEGARYGP-SLMPGGNPAAWPRIKPIFQTLAAKAGNNEPCCDWVGEQGAGHYVKM 188

Query: 694 TNNXL 708
            +N +
Sbjct: 189 VHNGI 193


>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 635 TXRRGRDLSKSSLRPPAMKARVAFXAPMTPPDTGASVNPSPFSKA 501
           T R+GR  S SS  PP       +  P + P+TGAS +  PF+ +
Sbjct: 110 TMRQGRFPSSSSEFPPKNSK---YQLPGSMPNTGASSSQDPFTNS 151


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 166 SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAA 300
           +S T+ NVA +G GN+GG +   +  KGF          + N  A
Sbjct: 3   ASRTNVNVAIVGTGNIGGELLNQI--KGFNENASTNGTTSFNVVA 45


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 155 DGRIVLTPTRMWLSSASETWEDSWLRTWLK 244
           +G+I+L   ++WL       E  W   WL+
Sbjct: 105 NGKILLIRPKIWLCDDGNFRESRWFTPWLR 134


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 614 LSKSSLRPPAMKARVAFXAPMTPPDTGASVN 522
           L+ SS+ PPA  A  +     TP + G S+N
Sbjct: 248 LAFSSIEPPASSASTSPRNTPTPSNNGTSIN 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,977
Number of Sequences: 5004
Number of extensions: 67255
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)