Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_D23
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0175 - 12624608-12625297                                         29   1.3  
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445...    29   5.0  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  
08_01_0059 - 394001-394708                                             28   8.7  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   8.7  

>06_02_0175 - 12624608-12625297
          Length = 229

 Score = 29.1 bits (62), Expect(2) = 1.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 712 RRHASRREKGGQVSGKRQGRNRRAHEGLPGG 620
           RRH   +E GG   G++  R  R  EG+ GG
Sbjct: 138 RRHKGGKEGGGGGEGRKGIRTEREREGVGGG 168



 Score = 20.6 bits (41), Expect(2) = 1.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 541 GGGAYGKTPATRPFYGS 491
           GGG  G+    RP Y S
Sbjct: 166 GGGGAGRRHGRRPSYSS 182


>06_03_1006 +
           26844161-26844198,26844304-26844372,26844526-26844591,
           26844831-26844902,26844982-26845053,26846179-26846244,
           26846409-26846881,26846966-26847324,26847429-26847697,
           26847780-26847918,26848323-26848462,26848612-26848768,
           26848925-26848978,26849457-26849539,26851085-26851136
          Length = 702

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 769 WAVCPKPPVXPDXWXPYPV-XIXLSPT--PXKNXLSPP 873
           +AV P PP  P    P+PV  + ++P   P K  +SPP
Sbjct: 322 FAVDPPPPPPPPFLPPFPVEKVTVNPVVPPEKRYISPP 359


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 344 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 499
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 293 NESAN---ARGEAVCVLGALPLPRSLTRCAR 376
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>08_01_0059 - 394001-394708
          Length = 235

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 763 PSWAVCPKPPVXPDXWXPYPVXIXLSPTPXKNXLSPPGXXP 885
           PS  + P PP  P  + P P    L+P P    +SPP   P
Sbjct: 28  PSPPIRPPPPPTPRPYAPPPPSHPLAPPPP--HISPPAPVP 66


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 712 RRHASRREKGGQVSGKRQGRNRRAHEGLPGG 620
           R H   R +   +  +R+GR R AHEG+  G
Sbjct: 79  RGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,809,285
Number of Sequences: 37544
Number of extensions: 521721
Number of successful extensions: 1572
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)