Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_D19
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.29 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.66 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 700  PPPPPPPP 723
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 25.4 bits (53), Expect = 0.66
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 700  PPPPPPPPXG 729
            PPPPPPP  G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 822  PPPPPPP 842
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 824  PPPPPPP 844
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 822  PPPPPPP 842
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 823  PPPPPPP 843
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -1

Query: 790 GGXXXGXXXXGXXGGXXGXGXPXGGGGGG 704
           G    G    G  GG    G   GGGGGG
Sbjct: 23  GSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 25.0 bits (52), Expect = 0.87
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 776 GGXXXGXXGGXXGXXXPXGGGGGGGG 699
           GG   G  GG        GGGGGG G
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGGLG 53


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 700 PPPPPPPP 723
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 702 PPPPPPPXGXP 734
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 703 PPPPPPPXGXXXP 741
           P PPPPP     P
Sbjct: 341 PAPPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 700  PPPPPPPP 723
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/42 (28%), Positives = 12/42 (28%)
 Frame = +3

Query: 609 GXPXLPPPXXXPPNNXXXXRPPXPXXXXXXXPPPPPPPXGXP 734
           G P   P     P       PP P        PP  PP   P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 711 PPPPXGXPXPXXPPXXPXXXXP 776
           PP P   P P  PP  P    P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/41 (26%), Positives = 11/41 (26%)
 Frame = +3

Query: 717 PPXGXPXPXXPPXXPXXXXPXXXPPPXXXXXXXXXPPPPPP 839
           P  G P P   P           PP          PP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 150 CTSISHVSILFVYSP 106
           C SIS++S+L  Y P
Sbjct: 246 CVSISYLSVLAFYLP 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,071
Number of Sequences: 438
Number of extensions: 12250
Number of successful extensions: 60
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)