Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_D18
(949 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0180 + 2034021-2034023,2034741-2035088 37 0.020
12_02_0910 + 24225180-24225415,24225523-24225678,24226387-242264... 30 2.3
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 30 2.3
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 30 3.1
02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747... 30 3.1
01_06_1682 - 39130696-39131705,39132355-39132583 29 4.1
01_05_0249 - 19903154-19903454,19904114-19904168,19904707-199047... 29 7.1
>04_01_0180 + 2034021-2034023,2034741-2035088
Length = 116
Score = 37.1 bits (82), Expect = 0.020
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = +3
Query: 309 DGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATXL 488
D + ++ LN L + + N EALE+ QN+ R EE +K H +++K L
Sbjct: 24 DAHKDQVKGLNGRISKLNDTIKELNDTI-EALERQVQNLTRYKEEKQKQHANLQKEFAEL 82
Query: 489 REKLXAAXAXHRAGIPEV 542
K A HR P V
Sbjct: 83 ERKYRDLDAAHRNCGPTV 100
>12_02_0910 +
24225180-24225415,24225523-24225678,24226387-24226450,
24226738-24226947,24227678-24227866,24228044-24228342,
24228575-24228851,24229045-24229317,24230316-24230549,
24230707-24230856
Length = 695
Score = 30.3 bits (65), Expect = 2.3
Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 7/144 (4%)
Frame = +3
Query: 111 QYIMAAK-----FVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKS 275
+Y M +K F VL I + G V FFK+ T H + Q
Sbjct: 163 EYFMTSKPLPQHFTVLVRAIPVTNGVSVSDAVDKFFKEYHSSTYLSHTVVHQTGKLRRLL 222
Query: 276 KDAQDFSKAWKDGSESVLQQLNAFAKSLQGALG--DANGKAKEALEQSRQNIERTAEELR 449
DA++ + +SV + G G D GK ++ LE +N+ +
Sbjct: 223 NDAENICTKLAN-LKSVRRTSGDPPGKFLGIFGRNDLVGKYQKRLEDLEENVRMEQSDTT 281
Query: 450 KAHPDVEKNATXLREKLXAAXAXH 521
++ +V R + AA A +
Sbjct: 282 RSRQEVPAAFVSFRSRYGAANAIY 305
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 366 ALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATXLREKLXAA 509
A+ DA G+ ++A+E ++ E+L A+PDVE L E L A
Sbjct: 515 AIYDAMGRVEDAIEILEHVLKVREEKLGTANPDVEDEKLRLAELLKEA 562
>11_06_0061 - 19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 29.9 bits (64), Expect = 3.1
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Frame = +3
Query: 237 KTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQL--NAFAKSLQGALGDANGKAKEALEQ 410
++L+Q L + + D++ + +DG E + +Q+ AFA S AL D N A LEQ
Sbjct: 946 QSLQQILTKLLQIRS--DYTNSLRDG-EKLKEQIADKAFAVSRVDALLDENDSAIAKLEQ 1002
Query: 411 SRQNIERTAEELRKAHPDVEKNATXLREKLXAAXAXH 521
+ +++ K D + + L+ + A H
Sbjct: 1003 ELGKLRWKGQKMSKKKEDEDAELSRLKAENNNAEEAH 1039
>02_03_0273 + 17173983-17174339,17174423-17174575,17174638-17174700,
17174943-17175026,17175120-17175242,17175466-17175519,
17175669-17175764,17176163-17176258,17177179-17177324,
17178503-17178632,17178697-17179272,17179364-17179462,
17179535-17179687,17179794-17180558,17181384-17181683
Length = 1064
Score = 29.9 bits (64), Expect = 3.1
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +3
Query: 228 EFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQ--GALGDANGKAKEA 401
+F L +Q + L ++ + + W D ++ + QQL+ A+++Q G L A+EA
Sbjct: 903 KFINALARQVSILRAEREKE--RRFWMDENKGLQQQLSDTAEAVQAAGELLVRLNDAEEA 960
Query: 402 LEQSRQNIERTAEELRKAHPDVE 470
+++ E +E+ KA +++
Sbjct: 961 ASLAQKRAELAEQEMNKAFAEID 983
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 29.5 bits (63), Expect = 4.1
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +1
Query: 604 KAXLQRPS-PXNXPGXDPXKIPXRAXNRXSXXRSNFXXPPPXNXXXPFLFXXXNPP 768
K +Q P P N P P + P N S N PPP N P +PP
Sbjct: 176 KPHIQPPIFPYNSPPPSPYQYPSPPFNYKSPPLPNQFSPPPFNKFPPPSHQYPSPP 231
>01_05_0249 -
19903154-19903454,19904114-19904168,19904707-19904791,
19905140-19905511
Length = 270
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 345 FAKSLQGALG--DANGKAKEALEQSRQNIERTAEELRKAHPDV 467
F KSL G + D +GKAK+ + + + + +EE++ + DV
Sbjct: 184 FEKSLVGQINIEDMSGKAKDVINEEGSSEDGNSEEMKDSDDDV 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,397,386
Number of Sequences: 37544
Number of extensions: 335360
Number of successful extensions: 1241
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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