Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_D16
         (943 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.54 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.72 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.95 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   2.2  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   2.2  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    27   2.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.7  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   6.7  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   8.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   9.6  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 18/64 (28%), Positives = 19/64 (29%)
 Frame = +1

Query: 652 PPXGGXXPXSPXNXRGXPPXKXPXPPPXPPPXPXXXXXXXXXXXVFXXXXXXXXXXPPKX 831
           PP     P SP +    P    P P   PPP                         PPK 
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA--PSLPSAVPPMPPKV 201

Query: 832 PPPP 843
           PPPP
Sbjct: 202 PPPP 205



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
 Frame = +1

Query: 649 PPPXGGXXPX-SPXNXRGXPPXKXPXPPPXPPP 744
           PPP     P  SP +    P    P PP  PPP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 858 PPPPXXSNXTXXSPXKXPPRP 920
           PP P  SN T  SP   PPRP
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRP 274



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 652 PPXGGXXPXSPXNXRGXPPXKXPXPPPXPPP 744
           PP     P S    R  P    P PPP PPP
Sbjct: 230 PPIPPSIPSSRPPER-VPSLSAPAPPPIPPP 259



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 21/85 (24%), Positives = 21/85 (24%), Gaps = 1/85 (1%)
 Frame = +2

Query: 617 PAXXXXXXPXXPPPXGGXXXFPPXTXGXXPPKKXXXPPRXPPRXPXPXXRAPXGGGFSXX 796
           PA      P  PPP               PP     PP    R   P             
Sbjct: 282 PAINSTSKPPLPPPSSRVSAAALAANKKRPPPPP--PPSRRNRGKPPIGNGSSNSSLPPP 339

Query: 797 XXXXXXNXXQKXP-PPXXXGAPPPP 868
                 N     P PP    APPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 19/76 (25%), Positives = 19/76 (25%)
 Frame = +2

Query: 641 PXXPPPXGGXXXFPPXTXGXXPPKKXXXPPRXPPRXPXPXXRAPXGGGFSXXXXXXXXNX 820
           P  P P       PP      PP      P  PP  P      P   G            
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP---P 471

Query: 821 XQKXPPPXXXGAPPPP 868
               PPP    AP  P
Sbjct: 472 AAPAPPPAPAPAPAAP 487



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +1

Query: 652 PPXGGXXPXSPXNXRGXPPXKXPXPPPXPPPXP 750
           PP     P  P      PP     P P P P P
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +2

Query: 641  PXXPPPXGGXXXFPPXTXGXXPPKKXXXPPRXPPRXPXPXXRAPXGG 781
            P  P P  G    PP +     PK     P  PP    P    P  G
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = -2

Query: 783 PPPXGALXXGXGXRGGXRGGXXXFXGGXXPXVXGGXXXXPPXGGGXXG 640
           P   G      G RGG  GG   F GG      GG        GG  G
Sbjct: 5   PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGG 52


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
 Frame = -2

Query: 756 GXGXRGGXRGGXXXFXGGXXPXVXGGXXXXP--PXGGGXXGXXXXXXAGG 613
           G G RGG RGG     GG      GG         GGG  G       GG
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGG 185


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 84  YCTNVSAC*LFSNVNSVNCDLVW 152
           YC +V  C   ++VN +NC+  W
Sbjct: 201 YCLHVYCCKHLAHVNCINCNTPW 223


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +1

Query: 652 PPXGGXXPXSPXNXRGXPPXKXPXPPPXPPP 744
           PP     P +       P    P PPP PPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
 Frame = +1

Query: 649  PPPXGGXXPXSPXNXRGXPPXKXPXP--PPXPPPXP 750
            PP      P  P      PP   P P  PP  PP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 834  PPPXXRXRPPPPXXSNXTXXSPXKXPPRPXP 926
            PPP     PPPP  +      P   PP P P
Sbjct: 1707 PPPPPMSVPPPPS-APPMPAGPPSAPPPPLP 1736


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 706 PXKXPXPPPXPPPXP 750
           P K P P P PPP P
Sbjct: 802 PFKAPPPAPLPPPAP 816


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = +2

Query: 650 PPPXGGXXXFPPXTXGXXPPKKXXXPPRXPPRXPXPXXRA 769
           PPP      +PP      PP +       P + P P  +A
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQA 245


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
 Frame = +1

Query: 649 PPPXGGXXPX-SPXNXRGXPPXKXPXPPPXPPPXP 750
           PPP     P  +P      PP      PP PPP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
 Frame = +1

Query: 649 PPPX---GGXXPXSPXNXRGXPPXKXPXPPPXPPPXP 750
           PPP    GG  P  P      P      PPP PPP P
Sbjct: 752 PPPAPIMGGPPPPPPP-----PGVAGAGPPPPPPPPP 783


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect(2) = 9.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 724 PPPXPPPXP 750
           PPP PPP P
Sbjct: 945 PPPPPPPPP 953



 Score = 20.6 bits (41), Expect(2) = 9.6
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 820 PPKXPPPPXXGXA 858
           PP  PPPP    A
Sbjct: 946 PPPPPPPPLVSAA 958


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,812
Number of Sequences: 5004
Number of extensions: 26337
Number of successful extensions: 193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)