Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_D16
         (943 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.25 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.25
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 649 PPPXGGXXPXSPXNXRGXPPXKXPXPPPXPPP 744
           P P     P +P   RG PP     PPP  PP
Sbjct: 23  PQPSPHQSPQAPQ--RGSPPNPSQGPPPGGPP 52



 Score = 25.4 bits (53), Expect = 0.75
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +3

Query: 834 PPPXXRXRPPPPXXSNXTXXSPXKXPPRPXPLXPT 938
           PP      PP P  SN +   P    P   P  PT
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPT 444


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 820  PPKXPPPPXXGXA 858
            PP  PPPP  G A
Sbjct: 1355 PPPPPPPPSSGQA 1367


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +1

Query: 661  GGXXPXSPXNXRGXPPXKXPXPPPXPP 741
            G     S  + R  P    P PPP PP
Sbjct: 1838 GSVGRRSVGSARNIPVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,944
Number of Sequences: 438
Number of extensions: 5944
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)