Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_D15
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70035-5|CAA93865.2|  429|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF040650-3|ABE73333.1|  836|Caenorhabditis elegans Hypothetical ...    28   7.7  
AF040650-2|AAT81190.1|  939|Caenorhabditis elegans Hypothetical ...    28   7.7  
AF040650-1|AAB95011.1|  952|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z70035-5|CAA93865.2|  429|Caenorhabditis elegans Hypothetical
           protein R09D1.5 protein.
          Length = 429

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 166 LHTVTAISKTMTKTHCISFIFNFLGVVPLPAFGCSGLRSIRQILRIP 26
           +H+   I   +T+T  + F+F  L +V + + G   LR+ R + + P
Sbjct: 20  VHSEKRIPSILTRTIAVLFVFALLALVSIGSEGVPQLRNSRDLTKSP 66


>AF040650-3|ABE73333.1|  836|Caenorhabditis elegans Hypothetical
           protein T04B8.5c protein.
          Length = 836

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 63  LQPNAGSGTTPKKLKMKLIQCVFVIVLLMAVTVCSSPLLTQT 188
           L  N G+G  P     + + CV V ++L+ +++  S L  +T
Sbjct: 73  LMNNIGNGQFPDSPAWRFVYCVLVSLVLLVLSLLGSALFAKT 114


>AF040650-2|AAT81190.1|  939|Caenorhabditis elegans Hypothetical
           protein T04B8.5b protein.
          Length = 939

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 63  LQPNAGSGTTPKKLKMKLIQCVFVIVLLMAVTVCSSPLLTQT 188
           L  N G+G  P     + + CV V ++L+ +++  S L  +T
Sbjct: 176 LMNNIGNGQFPDSPAWRFVYCVLVSLVLLVLSLLGSALFAKT 217


>AF040650-1|AAB95011.1|  952|Caenorhabditis elegans Hypothetical
           protein T04B8.5a protein.
          Length = 952

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 63  LQPNAGSGTTPKKLKMKLIQCVFVIVLLMAVTVCSSPLLTQT 188
           L  N G+G  P     + + CV V ++L+ +++  S L  +T
Sbjct: 189 LMNNIGNGQFPDSPAWRFVYCVLVSLVLLVLSLLGSALFAKT 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,735
Number of Sequences: 27780
Number of extensions: 266982
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)