Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_D13
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a...    31   1.4  
AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a...    31   1.4  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical p...    29   3.3  
D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    29   5.7  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    29   5.7  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    29   5.7  
U27312-9|AAA68252.1|  239|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform b protein.
          Length = 309

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
 Frame = -2

Query: 821 KGXAXWGGXKGVGWXXXX-RXXRGGXGGPXXPKKXXFLRGXXXGGXGPXXTXGXXXXGGP 645
           +G    GG  G GW     R   G  GGP    +  +  G   GG G     G    GGP
Sbjct: 178 RGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGP 237


>AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform d protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
 Frame = -2

Query: 821 KGXAXWGGXKGVGWXXXX-RXXRGGXGGPXXPKKXXFLRGXXXGGXGPXXTXGXXXXGGP 645
           +G    GG  G GW     R   G  GGP    +  +  G   GG G     G    GGP
Sbjct: 216 RGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGP 275


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/65 (30%), Positives = 22/65 (33%)
 Frame = -2

Query: 818 GXAXWGGXKGVGWXXXXRXXRGGXGGPXXPKKXXFLRGXXXGGXGPXXTXGXXXXGGPXX 639
           G + WGG +G GW        G  GG          RG   GG G     G    GG   
Sbjct: 60  GGSGWGGGRGGGW--GNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGG 117

Query: 638 XX*RG 624
              RG
Sbjct: 118 GGGRG 122


>U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical
           protein T17H7.1 protein.
          Length = 682

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = -3

Query: 850 PAPXXPGKXXKGXPXGXGXRGLVGAXXGGXXGGXXAXPIXPKKXVFCGAXXRGG 689
           P    PG+   G P G G RG       G  GG    P    +  F G    GG
Sbjct: 385 PQDDFPGRRGSGGPGGRGGRGQGPDFGPGRQGGRGQGPDFGPQDDFSGRRGSGG 438


>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/58 (31%), Positives = 21/58 (36%)
 Frame = -2

Query: 818 GXAXWGGXKGVGWXXXXRXXRGGXGGPXXPKKXXFLRGXXXGGXGPXXTXGXXXXGGP 645
           G   +GG  G GW       +GG GGP   +          GG G     G    GGP
Sbjct: 248 GQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQ--------GGGGWGQQGGGGQGGWGGP 297


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/58 (31%), Positives = 21/58 (36%)
 Frame = -2

Query: 818 GXAXWGGXKGVGWXXXXRXXRGGXGGPXXPKKXXFLRGXXXGGXGPXXTXGXXXXGGP 645
           G   +GG  G GW       +GG GGP   +          GG G     G    GGP
Sbjct: 210 GQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQ--------GGGGWGQQGGGGQGGWGGP 259


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/58 (31%), Positives = 21/58 (36%)
 Frame = -2

Query: 818 GXAXWGGXKGVGWXXXXRXXRGGXGGPXXPKKXXFLRGXXXGGXGPXXTXGXXXXGGP 645
           G   +GG  G GW       +GG GGP   +          GG G     G    GGP
Sbjct: 248 GQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQ--------GGGGWGQQGGGGQGGWGGP 297


>U27312-9|AAA68252.1|  239|Caenorhabditis elegans Hypothetical
           protein F26A1.11 protein.
          Length = 239

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 746 PXPPXXPSXXRXNQPPXXXPXWPP 817
           P PP  PS  R  +PP   P  PP
Sbjct: 34  PRPPRPPSPSRPQRPPPSRPQRPP 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,142,245
Number of Sequences: 27780
Number of extensions: 288668
Number of successful extensions: 769
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)