Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_D11
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 252 4e-68
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 60 6e-10
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 58 2e-09
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 55 1e-08
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 54 4e-08
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 52 1e-07
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 51 3e-07
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 51 3e-07
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 50 3e-07
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 50 4e-07
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 48 2e-06
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 47 3e-06
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 47 4e-06
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 46 5e-06
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 44 2e-05
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 42 9e-05
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 40 4e-04
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 40 4e-04
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 40 5e-04
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 40 6e-04
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 31 0.17
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.67
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 1.2
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 1.2
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 28 1.6
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 2.1
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 28 2.1
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 27 2.7
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 4.8
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 8.3
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 26 8.3
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 8.3
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 252 bits (618), Expect = 4e-68
Identities = 115/198 (58%), Positives = 149/198 (75%)
Frame = +2
Query: 179 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 358
+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++KGKRRK+TV IVL+D+
Sbjct: 39 KKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVKGKRRKDTVLIVLTDEEME 98
Query: 359 DEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 538
D R+ D+V+I PCP +KY +R+ +LP+ D+VEGLTG+LF+VYLKPY
Sbjct: 99 DGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTVEGLTGSLFDVYLKPY 158
Query: 539 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEAL 718
F+EAYRPI + D F+VRG MR VEFKVV+ P F IV+ DT+IH +GEPI RE+EE +L
Sbjct: 159 FVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSL 218
Query: 719 NAVGYDDIGGCRKQLAQI 772
VGYDDIGGCR+Q+AQI
Sbjct: 219 AEVGYDDIGGCRRQMAQI 236
Score = 70.1 bits (164), Expect = 4e-13
Identities = 29/34 (85%), Positives = 32/34 (94%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
LRHP LFK+IG+KPPRGILMYGPPGTGKTL+ RA
Sbjct: 244 LRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARA 277
Score = 42.3 bits (95), Expect = 9e-05
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +3
Query: 810 FKAIGVKPPRGILMYGPPGTGKTLIGRA 893
F GV P +G+L +GPPGTGKTL+ +A
Sbjct: 523 FLRFGVTPSKGVLFFGPPGTGKTLLAKA 550
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 59.7 bits (138), Expect = 6e-10
Identities = 22/34 (64%), Positives = 30/34 (88%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L++P LF +G+KPP+G+L+YGPPGTGKTL+ RA
Sbjct: 152 LKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARA 185
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 57.6 bits (133), Expect = 2e-09
Identities = 21/34 (61%), Positives = 30/34 (88%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
++HP LF+++G+ P+GIL+YGPPGTGKTL+ RA
Sbjct: 165 VKHPELFESLGIPQPKGILLYGPPGTGKTLLARA 198
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 55.2 bits (127), Expect = 1e-08
Identities = 19/34 (55%), Positives = 29/34 (85%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L HP L++ +G+KPP+G+++YG PGTGKTL+ +A
Sbjct: 211 LTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKA 244
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 53.6 bits (123), Expect = 4e-08
Identities = 20/33 (60%), Positives = 27/33 (81%)
Frame = +3
Query: 795 RHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
++P LFK + PPRG+L+YGPPGTGKT++ RA
Sbjct: 300 QNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRA 332
Score = 47.2 bits (107), Expect = 3e-06
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L H F +GV+PP+G+L+YGPPG KT+ +A
Sbjct: 568 LTHGETFSRLGVRPPKGVLLYGPPGCSKTITAKA 601
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 52.0 bits (119), Expect = 1e-07
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = +3
Query: 810 FKAIGVKPPRGILMYGPPGTGKTLIGRA 893
F+ +GVKPP+G LM+GPPGTGKTL+ RA
Sbjct: 211 FRKLGVKPPKGCLMFGPPGTGKTLLARA 238
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 50.8 bits (116), Expect = 3e-07
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L L++ IG+ PPRG+L+YGPPGTGKT++ +A
Sbjct: 154 LTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKA 187
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 50.8 bits (116), Expect = 3e-07
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L +P +F+ ++PPRG+L +GPPGTGKTL+ RA
Sbjct: 286 LLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARA 319
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 50.4 bits (115), Expect = 3e-07
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L P F +G+ PP+GI++YGPPGTGKTL RA
Sbjct: 199 LLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARA 232
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 50.0 bits (114), Expect = 4e-07
Identities = 16/34 (47%), Positives = 27/34 (79%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
++HP +++ G+ PPRG+L++GPPG GKT++ A
Sbjct: 194 IKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANA 227
Score = 47.2 bits (107), Expect = 3e-06
Identities = 15/34 (44%), Positives = 27/34 (79%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
++ P L++++G+ P G+L++GPPG GKTL+ +A
Sbjct: 512 IKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKA 545
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 48.0 bits (109), Expect = 2e-06
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
LR P+ F +G K PRG+L+ GPPGTGKT++ RA
Sbjct: 286 LRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARA 319
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 47.2 bits (107), Expect = 3e-06
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGR 890
L +P +F + + PPRG+L +GPPGTGKTL+ R
Sbjct: 392 LLYPEVFLHLHITPPRGVLFHGPPGTGKTLMAR 424
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 46.8 bits (106), Expect = 4e-06
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L+ P LF G+KP G+L+YGPPGTGKTL+ +A
Sbjct: 675 LQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKA 707
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 46.4 bits (105), Expect = 5e-06
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L++P ++ +G K PRG ++ GPPGTGKTL+ +A
Sbjct: 315 LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKA 348
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 801 PSLFKAIGVKPPRGILMYGPPGTGKTLIGR 890
P + + +G+ +GIL+YGPPGTGKTLI R
Sbjct: 293 PGMVEKLGINHVKGILLYGPPGTGKTLIAR 322
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 42.3 bits (95), Expect = 9e-05
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +3
Query: 801 PSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
P LF+ + +P RG+L++GPPGTGKT++ RA
Sbjct: 482 PDLFQGLR-EPARGMLLFGPPGTGKTMLARA 511
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 40.3 bits (90), Expect = 4e-04
Identities = 16/31 (51%), Positives = 25/31 (80%)
Frame = +3
Query: 801 PSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
P LF+ + +P +G+L++GPPGTGKT++ RA
Sbjct: 402 PELFQGLR-EPVQGMLLFGPPGTGKTMLARA 431
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 40.3 bits (90), Expect = 4e-04
Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Frame = +3
Query: 792 LRHPSLFKAIG--VKPPRGILMYGPPGTGKTLIGRA 893
L++P +F G + P+G+L+YGPPG GKT++ +A
Sbjct: 109 LKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKA 144
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 39.9 bits (89), Expect = 5e-04
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +3
Query: 732 MMTSAVVANNWRKLXDGGVA--LRHPSLFKAIGVKPPRGILMYGPPGTGKT 878
M++S V+ +N +K+ V LR+ + G+ RG L+YGPPG+GKT
Sbjct: 206 MLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKT 256
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
++ P LF G KP GIL+YGPPGTGK+ + +A
Sbjct: 149 IKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAKA 181
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 31.5 bits (68), Expect = 0.17
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+++ ++K ++ P GIL++G PG GKT + A
Sbjct: 626 VKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASA 659
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.5 bits (63), Expect = 0.67
Identities = 25/89 (28%), Positives = 39/89 (43%)
Frame = +3
Query: 627 QIHHHFASWLLIP*YTVTVNRLNVRKKRKH*MLSAMMTSAVVANNWRKLXDGGVALRHPS 806
QI+ A W IP V RL +K + + +++ V+ N + A+R
Sbjct: 551 QINEIVARWTGIP-----VTRLKTTEKERLLNMEKVLSKQVIGQN-EAVTAVANAIRLSR 604
Query: 807 LFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+ +P L GP GTGKTL+ +A
Sbjct: 605 AGLSDPNQPIASFLFCGPSGTGKTLLTKA 633
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -3
Query: 494 QLNHQLAVCGLV---FHISLKDTERWI 423
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -3
Query: 494 QLNHQLAVCGLV---FHISLKDTERWI 423
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +3
Query: 837 RGILMYGPPGTGKTLI 884
R ILM GPP TGKT I
Sbjct: 66 RAILMAGPPSTGKTAI 81
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 464 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 354
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3
Query: 843 ILMYGPPGTGKT 878
+L YGPPGTGKT
Sbjct: 59 MLFYGPPGTGKT 70
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 189 DPTVSLSKKQSAMTTQSWH-FHRPKW 263
DP ++ + Q + T+SWH FH +W
Sbjct: 272 DPVMARALSQGPIVTKSWHYFHYSEW 297
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 650 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 739
V PD + D E I+REEE++A A ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3
Query: 846 LMYGPPGTGKT 878
L++GPPGTGKT
Sbjct: 229 LIHGPPGTGKT 239
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 795 RHPSLFKAIGVKP-PRGILMYGPPGTGKTLI 884
+ P+L ++ V P+GI +YG G GKT +
Sbjct: 104 KSPTLTSSLPVPGMPKGIYLYGDVGCGKTAL 134
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 813 KAIGVKPPRGILMYGPPGTGKTLIGRA 893
K G + + + GPPG GKT +G++
Sbjct: 564 KLRGTMQGKIMCLVGPPGVGKTSVGKS 590
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,606,098
Number of Sequences: 5004
Number of extensions: 72895
Number of successful extensions: 278
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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