Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_D11
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 288 4e-78
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 283 9e-77
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 283 9e-77
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 58 1e-08
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 58 1e-08
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 56 3e-08
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 55 8e-08
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 55 8e-08
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 54 2e-07
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 54 2e-07
Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical pr... 52 7e-07
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 52 7e-07
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 51 1e-06
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 50 3e-06
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 50 3e-06
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 50 3e-06
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 50 3e-06
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 50 3e-06
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 50 3e-06
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 50 3e-06
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 48 1e-05
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 47 2e-05
AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival... 47 2e-05
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 46 4e-05
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 46 5e-05
Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical pr... 45 8e-05
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 44 1e-04
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 44 1e-04
Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical pr... 43 3e-04
Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical pr... 43 3e-04
Z70205-8|CAO78730.1| 270|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein. 42 5e-04
U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical pr... 42 6e-04
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 38 0.007
Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical pr... 34 0.16
Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical pr... 34 0.16
L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein. 34 0.16
Z48583-2|CAA88471.2| 595|Caenorhabditis elegans Hypothetical pr... 33 0.36
Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical p... 31 0.84
Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical p... 31 0.84
AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome as... 31 0.84
AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog... 31 0.84
AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein. 31 0.84
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical ... 29 5.9
U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna replic... 28 7.8
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 28 7.8
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 288 bits (706), Expect = 4e-78
Identities = 125/197 (63%), Positives = 164/197 (83%)
Frame = +2
Query: 182 KDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPD 361
K +PNRLIV+++ DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE+V I++SD++CP+
Sbjct: 26 KVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKESVAIIVSDESCPN 85
Query: 362 EKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYF 541
EK+RM DVVSI P P++ YG R+H+LPIDD++EGLTGNLF+V+LKPYF
Sbjct: 86 EKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVLPIDDTIEGLTGNLFDVFLKPYF 145
Query: 542 MEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALN 721
+EAYRP+H+ D F V+ MR VEFKVVET+P+P CIV+PDT+IH +G+PIKREEEEE++N
Sbjct: 146 LEAYRPLHKGDIFTVQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMN 205
Query: 722 AVGYDDIGGCRKQLAQI 772
+GYDD+GG RKQLAQI
Sbjct: 206 DIGYDDLGGVRKQLAQI 222
Score = 69.7 bits (163), Expect = 3e-12
Identities = 29/34 (85%), Positives = 32/34 (94%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
LRHP LFKAIG+KPPRGIL++GPPGTGKTLI RA
Sbjct: 230 LRHPQLFKAIGIKPPRGILLFGPPGTGKTLIARA 263
Score = 46.8 bits (106), Expect = 2e-05
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+ HP + G++P RG+L YGPPG GKTL+ +A
Sbjct: 503 VEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKA 536
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 283 bits (695), Expect = 9e-77
Identities = 130/197 (65%), Positives = 163/197 (82%)
Frame = +2
Query: 182 KDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPD 361
K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+ETV IVL+ DNCP+
Sbjct: 26 KKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRETVSIVLNADNCPN 85
Query: 362 EKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYF 541
+KI+M DVVSI+ ++YGKRVH+LPIDD++EGLTGNLF+V+L+PYF
Sbjct: 86 DKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTIEGLTGNLFDVFLRPYF 144
Query: 542 MEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALN 721
+AYRP+H+ D F V+ MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN
Sbjct: 145 TDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALN 204
Query: 722 AVGYDDIGGCRKQLAQI 772
VGYDD+GG RKQLAQI
Sbjct: 205 EVGYDDLGGVRKQLAQI 221
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
LRHP LFKAIGVKPPRGIL++GPPGTGKTLI RA
Sbjct: 229 LRHPQLFKAIGVKPPRGILLFGPPGTGKTLIARA 262
Score = 46.8 bits (106), Expect = 2e-05
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+ HP + G++P RG+L YGPPG GKTL+ +A
Sbjct: 502 VEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKA 535
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 283 bits (695), Expect = 9e-77
Identities = 130/197 (65%), Positives = 163/197 (82%)
Frame = +2
Query: 182 KDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPD 361
K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+ETV IVL+ DNCP+
Sbjct: 26 KKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRETVSIVLNADNCPN 85
Query: 362 EKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYF 541
+KI+M DVVSI+ ++YGKRVH+LPIDD++EGLTGNLF+V+L+PYF
Sbjct: 86 DKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTIEGLTGNLFDVFLRPYF 144
Query: 542 MEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALN 721
+AYRP+H+ D F V+ MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN
Sbjct: 145 TDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALN 204
Query: 722 AVGYDDIGGCRKQLAQI 772
VGYDD+GG RKQLAQI
Sbjct: 205 EVGYDDLGGVRKQLAQI 221
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
LRHP LFKAIGVKPPRGIL++GPPGTGKTLI RA
Sbjct: 229 LRHPQLFKAIGVKPPRGILLFGPPGTGKTLIARA 262
Score = 46.8 bits (106), Expect = 2e-05
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+ HP + G++P RG+L YGPPG GKTL+ +A
Sbjct: 502 VEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKA 535
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 57.6 bits (133), Expect = 1e-08
Identities = 21/34 (61%), Positives = 29/34 (85%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
++HP LF A+G+ P+G+L+YGPPGTGKTL+ RA
Sbjct: 174 VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 207
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 57.6 bits (133), Expect = 1e-08
Identities = 21/34 (61%), Positives = 29/34 (85%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
++HP LF A+G+ P+G+L+YGPPGTGKTL+ RA
Sbjct: 195 VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 228
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 56.0 bits (129), Expect = 3e-08
Identities = 20/34 (58%), Positives = 29/34 (85%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
++HP LF A+G+ P+G+L++GPPGTGKTL+ RA
Sbjct: 179 VKHPELFDALGIAQPKGVLLFGPPGTGKTLLARA 212
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 54.8 bits (126), Expect = 8e-08
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L +P LFK +G+ PP+G L++GPPGTGKTL+ RA
Sbjct: 162 LINPELFKRVGITPPKGCLLFGPPGTGKTLLARA 195
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 54.8 bits (126), Expect = 8e-08
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L +P LFK +G+ PP+G L++GPPGTGKTL+ RA
Sbjct: 170 LINPELFKRVGITPPKGCLLFGPPGTGKTLLARA 203
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 53.6 bits (123), Expect = 2e-07
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L HP + +G++PP+G+L+YGPPGTGKTL RA
Sbjct: 197 LLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARA 230
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 53.6 bits (123), Expect = 2e-07
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L H L++ IG+ PPRG+LMYGPPG GKT++ +A
Sbjct: 181 LTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKA 214
>Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical
protein K04G2.3 protein.
Length = 724
Score = 51.6 bits (118), Expect = 7e-07
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +3
Query: 795 RHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+HP F+ G+ PP GIL+YGPPG KTLI RA
Sbjct: 480 KHPEAFERFGIDPPAGILLYGPPGCSKTLIARA 512
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 51.6 bits (118), Expect = 7e-07
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+ H F +G+ PP+G+LMYGPPGTGKT++ RA
Sbjct: 197 MTHKDRFVNLGIHPPKGVLMYGPPGTGKTMMARA 230
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 51.2 bits (117), Expect = 1e-06
Identities = 17/34 (50%), Positives = 28/34 (82%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L HP ++ +G++PP+G+++YG PGTGKTL+ +A
Sbjct: 208 LTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKA 241
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 49.6 bits (113), Expect = 3e-06
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +3
Query: 798 HPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+P +F+ + PP+G++ YGPPGTGKTL+ RA
Sbjct: 413 YPEVFEKFRINPPKGVVFYGPPGTGKTLVARA 444
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 49.6 bits (113), Expect = 3e-06
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +3
Query: 798 HPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+P +F+ + PP+G++ YGPPGTGKTL+ RA
Sbjct: 411 YPEVFEKFRINPPKGVVFYGPPGTGKTLVARA 442
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 49.6 bits (113), Expect = 3e-06
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +3
Query: 798 HPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+P +F+ + PP+G++ YGPPGTGKTL+ RA
Sbjct: 413 YPEVFEKFRINPPKGVVFYGPPGTGKTLVARA 444
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 49.6 bits (113), Expect = 3e-06
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +3
Query: 798 HPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+P +F+ + PP+G++ YGPPGTGKTL+ RA
Sbjct: 413 YPEVFEKFRINPPKGVVFYGPPGTGKTLVARA 444
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 49.6 bits (113), Expect = 3e-06
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +3
Query: 798 HPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+P +F+ + PP+G++ YGPPGTGKTL+ RA
Sbjct: 411 YPEVFEKFRINPPKGVVFYGPPGTGKTLVARA 442
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 49.6 bits (113), Expect = 3e-06
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +3
Query: 798 HPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+P +F+ + PP+G++ YGPPGTGKTL+ RA
Sbjct: 413 YPEVFEKFRINPPKGVVFYGPPGTGKTLVARA 444
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 49.6 bits (113), Expect = 3e-06
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +3
Query: 798 HPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+P +F+ + PP+G++ YGPPGTGKTL+ RA
Sbjct: 413 YPEVFEKFRINPPKGVVFYGPPGTGKTLVARA 444
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 47.6 bits (108), Expect = 1e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L HP ++ +G+ P+G+++YG PGTGKTL+ +A
Sbjct: 203 LTHPEYYEEMGITAPKGVILYGEPGTGKTLLAKA 236
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 46.8 bits (106), Expect = 2e-05
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L+ P F +GV PPRG +++GPPG GKT+ +A
Sbjct: 225 LKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQA 258
Score = 36.7 bits (81), Expect = 0.022
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +3
Query: 810 FKAIGVK-PPRGILMYGPPGTGKTLIGRA 893
F A+G+ P+GIL+ GPPG GKTL+ +A
Sbjct: 559 FAALGIDCRPQGILLCGPPGCGKTLLAKA 587
>AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival
CED-4-interactingprotein MAC-1 protein.
Length = 813
Score = 46.8 bits (106), Expect = 2e-05
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L+ P F +GV PPRG +++GPPG GKT+ +A
Sbjct: 225 LKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQA 258
Score = 36.7 bits (81), Expect = 0.022
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +3
Query: 810 FKAIGVK-PPRGILMYGPPGTGKTLIGRA 893
F A+G+ P+GIL+ GPPG GKTL+ +A
Sbjct: 559 FAALGIDCRPQGILLCGPPGCGKTLLAKA 587
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 46.0 bits (104), Expect = 4e-05
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +3
Query: 795 RHPSLFKAIGVKPPRGILMYGPPGTGKTLIGR 890
+ P +F I PP+G+L++GPPGTGKT+IGR
Sbjct: 337 KRPDVFTGIRA-PPKGVLLFGPPGTGKTMIGR 367
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 45.6 bits (103), Expect = 5e-05
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L++P +K +G K P+G ++ GPPGTGKTL+ +A
Sbjct: 312 LKNPQQYKDLGAKIPKGAILTGPPGTGKTLLAKA 345
>Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical
protein M03C11.5 protein.
Length = 676
Score = 44.8 bits (101), Expect = 8e-05
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L+ P + +G + P+G+L+ GPPGTGKTL+ RA
Sbjct: 220 LKDPEKYSRLGGRLPKGVLLVGPPGTGKTLLARA 253
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L++P F +G K PRG L+ GPPG GKTL+ +A
Sbjct: 304 LKNPGRFTKLGAKLPRGALLTGPPGCGKTLLAKA 337
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
L++P F +G K PRG L+ GPPG GKTL+ +A
Sbjct: 304 LKNPGRFTKLGAKLPRGALLTGPPGCGKTLLAKA 337
>Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 801 PSLFKAIGVKPPRGILMYGPPGTGKTLIGR 890
P + +G+K RGIL++GPPGTGKTL+ R
Sbjct: 319 PEFIEQLGMKHVRGILLFGPPGTGKTLMAR 348
>Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 801 PSLFKAIGVKPPRGILMYGPPGTGKTLIGR 890
P + +G+K RGIL++GPPGTGKTL+ R
Sbjct: 319 PEFIEQLGMKHVRGILLFGPPGTGKTLMAR 348
>Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical
protein H15N14.2b protein.
Length = 758
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 801 PSLFKAIGVKPPRGILMYGPPGTGKTLIGR 890
P + +G+K RGIL++GPPGTGKTL+ R
Sbjct: 253 PEFIEQLGMKHVRGILLFGPPGTGKTLMAR 282
>Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical
protein K04D7.2b protein.
Length = 339
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3
Query: 825 VKPPRGILMYGPPGTGKTLIGRA 893
+ PPRGIL+YGPPG GKTL+ +A
Sbjct: 111 LSPPRGILLYGPPGCGKTLLAKA 133
>Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical
protein K04D7.2a protein.
Length = 342
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3
Query: 825 VKPPRGILMYGPPGTGKTLIGRA 893
+ PPRGIL+YGPPG GKTL+ +A
Sbjct: 114 LSPPRGILLYGPPGCGKTLLAKA 136
>Z70205-8|CAO78730.1| 270|Caenorhabditis elegans Hypothetical
protein C11H1.4b protein.
Length = 270
Score = 42.3 bits (95), Expect = 5e-04
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = +3
Query: 795 RHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
++P LF+++GV +GIL++GP G GKTL+ A
Sbjct: 23 KYPQLFESVGVPVSKGILLHGPSGCGKTLLANA 55
>Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical
protein C11H1.4a protein.
Length = 996
Score = 42.3 bits (95), Expect = 5e-04
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = +3
Query: 795 RHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
++P LF+++GV +GIL++GP G GKTL+ A
Sbjct: 749 KYPQLFESVGVPVSKGILLHGPSGCGKTLLANA 781
>AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein.
Length = 996
Score = 42.3 bits (95), Expect = 5e-04
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = +3
Query: 795 RHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
++P LF+++GV +GIL++GP G GKTL+ A
Sbjct: 749 KYPQLFESVGVPVSKGILLHGPSGCGKTLLANA 781
>U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical
protein C24B5.2a protein.
Length = 451
Score = 41.9 bits (94), Expect = 6e-04
Identities = 17/32 (53%), Positives = 26/32 (81%)
Frame = +3
Query: 798 HPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
+P+LFK + +P +GIL++GPPG GKTL+ +A
Sbjct: 200 NPNLFKGLR-QPVKGILLFGPPGNGKTLLAKA 230
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 792 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
++ P LF KP +GIL++GPPGTGK+ I +A
Sbjct: 138 IKFPQLFTG-NRKPWQGILLFGPPGTGKSYIAKA 170
>Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical
protein T01G9.5b protein.
Length = 475
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 801 PSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
P F+ + P + +++ GPPGTGKTLI RA
Sbjct: 216 PEFFQGLR-SPWKAMVLAGPPGTGKTLIARA 245
>Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical
protein T01G9.5a protein.
Length = 472
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 801 PSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
P F+ + P + +++ GPPGTGKTLI RA
Sbjct: 216 PEFFQGLR-SPWKAMVLAGPPGTGKTLIARA 245
>L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein.
Length = 472
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 801 PSLFKAIGVKPPRGILMYGPPGTGKTLIGRA 893
P F+ + P + +++ GPPGTGKTLI RA
Sbjct: 216 PEFFQGLR-SPWKAMVLAGPPGTGKTLIARA 245
>Z48583-2|CAA88471.2| 595|Caenorhabditis elegans Hypothetical
protein F54B3.3 protein.
Length = 595
Score = 32.7 bits (71), Expect = 0.36
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 837 RGILMYGPPGTGKTLIGRA 893
R ++ YGPPGTGKTL ++
Sbjct: 343 RNVMFYGPPGTGKTLFAKS 361
>Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical
protein F54C9.6b protein.
Length = 396
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 822 GVKPPRGILMYGPPGTGKT 878
GV RG L YGPPGTGK+
Sbjct: 193 GVPYRRGYLFYGPPGTGKS 211
>Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical
protein F54C9.6a protein.
Length = 442
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 822 GVKPPRGILMYGPPGTGKT 878
GV RG L YGPPGTGK+
Sbjct: 239 GVPYRRGYLFYGPPGTGKS 257
>AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome
assembly factor protein6 protein.
Length = 720
Score = 31.5 bits (68), Expect = 0.84
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 840 GILMYGPPGTGKTLIGRA 893
GI++YG PG GKTLI +A
Sbjct: 495 GIILYGSPGCGKTLIAKA 512
>AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog
protein.
Length = 720
Score = 31.5 bits (68), Expect = 0.84
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 840 GILMYGPPGTGKTLIGRA 893
GI++YG PG GKTLI +A
Sbjct: 495 GIILYGSPGCGKTLIAKA 512
>AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein.
Length = 720
Score = 31.5 bits (68), Expect = 0.84
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 840 GILMYGPPGTGKTLIGRA 893
GI++YG PG GKTLI +A
Sbjct: 495 GIILYGSPGCGKTLIAKA 512
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 626 TDPSPFCIVAPDTVIHCDGEPIKREEEEE--ALNAVGYD 736
++P+P VAP+ + E + E+EE A+ +GYD
Sbjct: 153 SNPAPAADVAPEAAAPAEAEALTDEQEENVLAITGMGYD 191
>AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical
protein Y39F10A.3 protein.
Length = 309
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 156 IIRAFIICHFIQNLLLESKNYYNFY 82
++ AF++C + N+LL SK+ Y FY
Sbjct: 8 LLLAFVVCLTLFNVLLWSKSNYGFY 32
>U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 4 protein.
Length = 334
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3
Query: 843 ILMYGPPGTGKT 878
+L YGPPGTGKT
Sbjct: 51 LLFYGPPGTGKT 62
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3
Query: 843 ILMYGPPGTGKT 878
+L YGPPGTGKT
Sbjct: 65 LLFYGPPGTGKT 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,346,271
Number of Sequences: 27780
Number of extensions: 427621
Number of successful extensions: 1270
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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