Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_D09
(918 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0560 + 19479597-19480667 31 0.97
07_03_0177 - 14770777-14772045 31 0.97
01_05_0490 + 22672241-22674679 31 0.97
10_08_0223 - 15986763-15987575 31 1.7
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 29 3.9
07_03_1751 - 29215074-29216270 29 3.9
05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420 29 5.2
01_01_0570 - 4231100-4232560 29 5.2
06_03_1326 - 29355467-29355817 29 6.8
06_01_0145 + 1092764-1093351 29 6.8
12_02_1114 - 26171876-26172493 28 9.0
06_01_0760 - 5676973-5677830 28 9.0
04_04_0679 + 27214577-27215023 28 9.0
03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,904... 28 9.0
02_02_0163 + 7320615-7321673 28 9.0
>07_03_0560 + 19479597-19480667
Length = 356
Score = 31.5 bits (68), Expect = 0.97
Identities = 26/77 (33%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Frame = -3
Query: 916 GVKXGGFGANXPQGWX-GXAPTPXXXXXP*XGGG*GERXPXFPXKGXKGGTGVXG*XGQG 740
G K GGFGA G G GGG G+ G GG G G G G
Sbjct: 186 GGKEGGFGAGGGVGGGAGGGGGMGGGGGGGFGGGGGKGGGFGAGGGMGGGAGGGGGLGGG 245
Query: 739 SEXGXGAXXGXFKGGNA 689
G G G GG A
Sbjct: 246 GGGGMGGGGGGGMGGGA 262
>07_03_0177 - 14770777-14772045
Length = 422
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -3
Query: 826 GGG*GERXPXFPXKGXKGGTGVXG*XGQGSEXGXGAXXGXFKGG 695
GGG G F G GG+G+ G G+G G G G F GG
Sbjct: 368 GGGGGGGGGGF---GGGGGSGIGGGFGKGGGFGFGVGGGGFGGG 408
>01_05_0490 + 22672241-22674679
Length = 812
Score = 31.5 bits (68), Expect = 0.97
Identities = 19/66 (28%), Positives = 22/66 (33%)
Frame = +1
Query: 721 PPXLXPNPAXFTRIPXSXPXPPFXESXGPFXLNPPPXRXXPXXXXXXXXXXXXXXXXPQT 900
PP P P TR P PP + P PPP + P P +
Sbjct: 638 PPQPPPPPPPTTRRSRKPPQPPSRPAPPP----PPPPQQQPPFYPRRAVVYYTYPLPPPS 693
Query: 901 PPXXPP 918
PP PP
Sbjct: 694 PPLPPP 699
>10_08_0223 - 15986763-15987575
Length = 270
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -3
Query: 784 GXKGGTGVXG*XGQGSEXGXGAXXGXFKG--GNAWDF 680
G GG G G G GS G GA G G GN W++
Sbjct: 42 GGGGGGGTNGGWGSGSGAGAGAGYGESGGDSGNTWNY 78
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 721 PPXLXPNPAXFTRIPXSXPXPPFXESXGPFXLNPPPXRXXP 843
PP P P + P S P PPF P PPP P
Sbjct: 63 PPGARPFPG--SPPPPSQPPPPFARPAAPVQQQPPPFGGPP 101
>07_03_1751 - 29215074-29216270
Length = 398
Score = 29.5 bits (63), Expect = 3.9
Identities = 26/74 (35%), Positives = 27/74 (36%)
Frame = -3
Query: 916 GVKXGGFGANXPQGWXGXAPTPXXXXXP*XGGG*GERXPXFPXKGXKGGTGVXG*XGQGS 737
G K GG G G+ G A GGG G G GG GV G G G
Sbjct: 55 GGKGGGVGVGGGGGFGGGAGGGLGH-----GGGIGGGFGGGKGGGLGGGVGVGGGIGHGG 109
Query: 736 EXGXGAXXGXFKGG 695
G G G KGG
Sbjct: 110 --GVGGGFGGGKGG 121
Score = 28.3 bits (60), Expect = 9.0
Identities = 23/71 (32%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = -3
Query: 904 GGFGANXPQGWXGXAPTPXXXXXP*XGGG*GERXPXFPXKGXKGG-TGVXG*XGQGSEXG 728
GG GA G G GG G + F G GG G G G G G
Sbjct: 265 GGLGAGGGAGGGGGIGGGAGGGAGAGGGFGGGKGGGFGGGGGGGGGAGAGGGFGGGKGGG 324
Query: 727 XGAXXGXFKGG 695
G G KGG
Sbjct: 325 FGGGFGGGKGG 335
>05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420
Length = 433
Score = 29.1 bits (62), Expect = 5.2
Identities = 20/64 (31%), Positives = 24/64 (37%)
Frame = -3
Query: 901 GFGANXPQGWXGXAPTPXXXXXP*XGGG*GERXPXFPXKGXKGGTGVXG*XGQGSEXGXG 722
G G P+G G P P GGG G R K +G G+ G S+ G G
Sbjct: 18 GGGGGGPRGCGGGGPRSGGGGGPRGGGGGGPRGSG-SSKPRRGDGGLGCGRGDDSDLGLG 76
Query: 721 AXXG 710
G
Sbjct: 77 YGGG 80
>01_01_0570 - 4231100-4232560
Length = 486
Score = 29.1 bits (62), Expect = 5.2
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = -3
Query: 916 GVKXGGFGANXPQGWXGXAPTPXXXXXP*X-GGG*GERXPXFPXKGXKGGTGVXG*XGQG 740
G GG GAN G G + GGG G +G +GG+G G G G
Sbjct: 394 GGTGGGSGANEGAGMGGGISSGAGAGGGLGVGGGGGAGGGIGASRGARGGSGAGGGAGMG 453
Query: 739 SEXGXGAXXG 710
G A G
Sbjct: 454 GGVGARAGGG 463
>06_03_1326 - 29355467-29355817
Length = 116
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 826 GGG*GERXPXFPXKGXKGGTGVXG*XGQGS-EXGXGAXXGXFKGGNA 689
GGG G+ G + G G G G+G E G G G + GG+A
Sbjct: 18 GGGGGKGGGGGSGGGGRSGGGGGGGGGKGGGEGGSGKYGGGYSGGHA 64
>06_01_0145 + 1092764-1093351
Length = 195
Score = 28.7 bits (61), Expect = 6.8
Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Frame = -3
Query: 904 GGFGANXPQGWXGXAPTPXXXXXP*XGGG*GERXPX--FPXKGXKGGTGVXG*XGQGSEX 731
GG G N G G P P GG G +G KGG G G G+G
Sbjct: 99 GGAGGNAGPGGVGGKGGPGGDGGPGGIGGRGGDGGCGGVGGRGRKGGRGGRG--GRGGSG 156
Query: 730 GXGAXXGXFKGGNAWD 683
G G G +GG D
Sbjct: 157 GFGGGDGG-RGGRGGD 171
>12_02_1114 - 26171876-26172493
Length = 205
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -3
Query: 787 KGXKGGTGVXG*XGQGSEXGXGAXXGXFKGGNAWDFYKS 671
+G G+G G G G G G G GG +W Y S
Sbjct: 56 EGGGSGSGGGGGGGGGGGGGGGGGGGGGGGGGSWREYSS 94
>06_01_0760 - 5676973-5677830
Length = 285
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = -3
Query: 826 GGG*GERXPXFPXKGXKGGTGVXG-*XGQGSEXGXGAXXGXFKGGNAWDFYKSXXGWPP 653
G G G+ P G GG+G GQG G G G +G + Y G+ P
Sbjct: 177 GSGYGQAGGYGPYYGPYGGSGAYAQGGGQGGGGGGGQNGGSGQGSGSGSGYGQAGGYGP 235
>04_04_0679 + 27214577-27215023
Length = 148
Score = 28.3 bits (60), Expect = 9.0
Identities = 20/45 (44%), Positives = 21/45 (46%)
Frame = -3
Query: 826 GGG*GERXPXFPXKGXKGGTGVXG*XGQGSEXGXGAXXGXFKGGN 692
GGG G R G GG G G GQG G GA G F GG+
Sbjct: 78 GGGVGGRGGSSGRGGHGGGFGWAG--GQG-HGGWGAGAGAFGGGS 119
>03_02_0514 +
9038606-9039790,9040211-9040432,9040548-9040655,
9041608-9041802,9041905-9042153,9042525-9042672,
9042673-9042779,9043311-9043475,9044506-9045948
Length = 1273
Score = 28.3 bits (60), Expect = 9.0
Identities = 22/59 (37%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = -3
Query: 826 GGG*GERXPXFPXKGXKGGTGVXG*XGQGSEXGXGAXX-GXFKGGNAWDFYKSXXGWPP 653
GGG G P G GG G G G G G G F GG A KS W P
Sbjct: 88 GGGFGGGAGG-PLGGGGGGWGAGGGGGGGGGGGGGGFWSRIFSGGAAHADEKSSGDWDP 145
>02_02_0163 + 7320615-7321673
Length = 352
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +2
Query: 500 GXPQNQGIPQEKTFNQKAXKRPXXV----KRPXCWRFSXG 607
G P+ G+P+E+ F ++A +R V R CW G
Sbjct: 101 GCPRCAGLPEERRFTREALRRGYAVLAVSSRAECWSLDTG 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,635,248
Number of Sequences: 37544
Number of extensions: 225193
Number of successful extensions: 682
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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