Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_D09
         (918 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y14690-1|CAA75002.1| 1496|Homo sapiens procollagen alpha 2(V) pr...    35   0.36 
X04758-1|CAA28454.1| 1099|Homo sapiens protein ( Human mRNA for ...    35   0.36 
BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein famil...    34   0.63 
AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.         34   0.63 
BC086874-1|AAH86874.1| 1139|Homo sapiens COL5A2 protein protein.       32   3.4  
AY016295-1|AAL13166.1| 1347|Homo sapiens type V preprocollagen a...    32   3.4  
AB209045-1|BAD92282.1| 1502|Homo sapiens alpha 2 type V collagen...    32   3.4  

>Y14690-1|CAA75002.1| 1496|Homo sapiens procollagen alpha 2(V)
           protein.
          Length = 1496

 Score = 35.1 bits (77), Expect = 0.36
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -3

Query: 904 GGFGANXPQGWXGXAPTPXXXXXP*XGGG*GER-XPXFP-XKGXKGGTGVXG*XGQGSEX 731
           GG G + P+G  G + TP     P   G  GER     P  KG +GG G  G  G     
Sbjct: 732 GGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGND 791

Query: 730 GXGAXXG 710
           G G   G
Sbjct: 792 GAGGLPG 798


>X04758-1|CAA28454.1| 1099|Homo sapiens protein ( Human mRNA for
           pro-alpha 2 (V) collagen chain. ).
          Length = 1099

 Score = 35.1 bits (77), Expect = 0.36
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -3

Query: 904 GGFGANXPQGWXGXAPTPXXXXXP*XGGG*GER-XPXFP-XKGXKGGTGVXG*XGQGSEX 731
           GG G + P+G  G + TP     P   G  GER     P  KG +GG G  G  G     
Sbjct: 335 GGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGND 394

Query: 730 GXGAXXG 710
           G G   G
Sbjct: 395 GAGGLPG 401


>BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein family
           A, member 1 (H/ACA small nucleolar RNPs) protein.
          Length = 217

 Score = 34.3 bits (75), Expect = 0.63
 Identities = 22/60 (36%), Positives = 24/60 (40%)
 Frame = -3

Query: 859 PTPXXXXXP*XGGG*GERXPXFPXKGXKGGTGVXG*XGQGSEXGXGAXXGXFKGGNAWDF 680
           P P     P  GGG G R       G +GG G  G  G G   G G   G F+GG    F
Sbjct: 159 PRPPGEKGPPRGGGRGGRG------GGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGF 212


>AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.
          Length = 217

 Score = 34.3 bits (75), Expect = 0.63
 Identities = 22/60 (36%), Positives = 24/60 (40%)
 Frame = -3

Query: 859 PTPXXXXXP*XGGG*GERXPXFPXKGXKGGTGVXG*XGQGSEXGXGAXXGXFKGGNAWDF 680
           P P     P  GGG G R       G +GG G  G  G G   G G   G F+GG    F
Sbjct: 159 PRPPGEKGPPRGGGRGGRG------GGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGF 212


>BC086874-1|AAH86874.1| 1139|Homo sapiens COL5A2 protein protein.
          Length = 1139

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = -3

Query: 904 GGFGANXPQGWXGXAPTPXXXXXP*XGGG*GER-XPXFP-XKGXKGGTGVXG*XGQGSEX 731
           GG G + P+G  G + TP     P   G  GER     P  KG +GG G  G  G     
Sbjct: 375 GGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGND 434

Query: 730 GXGAXXG 710
           G     G
Sbjct: 435 GARGLPG 441


>AY016295-1|AAL13166.1| 1347|Homo sapiens type V preprocollagen
           alpha 2 chain protein.
          Length = 1347

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = -3

Query: 904 GGFGANXPQGWXGXAPTPXXXXXP*XGGG*GER-XPXFP-XKGXKGGTGVXG*XGQGSEX 731
           GG G + P+G  G + TP     P   G  GER     P  KG +GG G  G  G     
Sbjct: 583 GGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGND 642

Query: 730 GXGAXXG 710
           G     G
Sbjct: 643 GARGLPG 649


>AB209045-1|BAD92282.1| 1502|Homo sapiens alpha 2 type V collagen
           preproprotein variant protein.
          Length = 1502

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = -3

Query: 904 GGFGANXPQGWXGXAPTPXXXXXP*XGGG*GER-XPXFP-XKGXKGGTGVXG*XGQGSEX 731
           GG G + P+G  G + TP     P   G  GER     P  KG +GG G  G  G     
Sbjct: 738 GGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGND 797

Query: 730 GXGAXXG 710
           G     G
Sbjct: 798 GARGLPG 804


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,806,418
Number of Sequences: 237096
Number of extensions: 1215197
Number of successful extensions: 1917
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1847
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11936890730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)