Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_D09
         (918 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.1  

>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 823 GG*GERXPXFPXKGXKGGTGVXG*XGQGSEXGXGAXXGXFKGGNAW 686
           GG G R   F   G   G GV G  G+G + G     G   GG ++
Sbjct: 809 GGYGGRGGGFGGTGRGRGGGVFGGGGRGGDFGGSGNFGGSGGGGSF 854


>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical
           protein C27H5.3 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -3

Query: 784 GXKGGTGVXG*XGQGSEXGXGAXXGXFKGGNAWDFYKS-XXGWPP 653
           G  GG G  G    G   G G   G  +GG+ WD   S   G PP
Sbjct: 113 GYDGGRGGYGGDRGGRGGGRGGYDGERRGGSRWDDGNSDRQGGPP 157


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 721 PPXLXPNPAXFTRIPXSXPXPPFXESXGPFXLNPPP 828
           PP + P P      P   P PP   S G +   PPP
Sbjct: 267 PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPP 302


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 721 PPXLXPNPAXFTRIPXSXPXPPFXESXGPFXLNPPP 828
           PP + P P      P   P PP   S G +   PPP
Sbjct: 277 PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPP 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,450,268
Number of Sequences: 27780
Number of extensions: 149579
Number of successful extensions: 287
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)