Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_D08
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 161 1e-40
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 55 1e-08
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 41 3e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.16
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.6
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 6.0
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 7.9
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 161 bits (391), Expect = 1e-40
Identities = 84/120 (70%), Positives = 95/120 (79%), Gaps = 3/120 (2%)
Frame = +1
Query: 262 DVQFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDS 432
D QFED +LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+
Sbjct: 66 DCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDT 125
Query: 433 GSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIK 612
GSPI IPVG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIK
Sbjct: 126 GSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIK 185
Score = 49.6 bits (113), Expect = 6e-07
Identities = 25/44 (56%), Positives = 26/44 (59%)
Frame = +2
Query: 611 KVVDLLAPYAXXXXXXXXXXXXXXXTVLIMXLINNVAKAHGGYS 742
KVVDLLAPYA TV I LINN+AKAHGGYS
Sbjct: 185 KVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYS 228
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +3
Query: 744 VFAGVRXXTXEXNDLYHEMXESG 812
VF GV T E NDLY EM E+G
Sbjct: 229 VFTGVGERTREGNDLYREMQETG 251
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 54.8 bits (126), Expect = 1e-08
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Frame = +1
Query: 343 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 519
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 520 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKSRRSARSLCQRRKDXVVWRSWCGQNCI 693
I T + + +AP + + E + TG+K+ S + + +++ ++ G+ I
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAI 206
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 40.7 bits (91), Expect = 3e-04
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +1
Query: 334 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 510
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 511 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKSRRSARSLCQRRK 651
+ + I+ +E++ TGI S S+ + +K
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIARGQK 165
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.16
Identities = 24/92 (26%), Positives = 40/92 (43%)
Frame = -3
Query: 608 IPVTRISCCTDMSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPE 429
+P T SC T S +G S+ ++ ++ + P S+ + I + S T P
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN-SSPLPT 280
Query: 428 SSTGCPRTKPSVPSMAMVRTVFSPKCWATSST 333
+ST C T S+P T +P TS++
Sbjct: 281 TSTSC-TTSTSIPPTGNSTTPVTPTVPPTSTS 311
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 518 GPRSSIGSPITLMMRPRVSA-PTGIRIGEPESSTGCPRTKPSVPSM 384
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 143 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 253
NPF N ++S+++MP L+NLQE + + P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 394 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 510
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,306,989
Number of Sequences: 5004
Number of extensions: 65232
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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