Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_D06
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    26   0.49 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   0.63 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.6  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   6.1  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   6.1  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 27/102 (26%), Positives = 28/102 (27%), Gaps = 4/102 (3%)
 Frame = +1

Query: 490 PXPPPPXPPXXGGXPXRXFPPXNXXXPRPPXXPP-PAXXXXXFFXXXPA---PPPXAXPX 657
           P P PP P        +  P  N     P   PP P           P    P     P 
Sbjct: 51  PQPRPPHPRLRREAEPKAEPGNNRPIYIPQPRPPHPRLRREAESEAEPGNNRPVYIPQPR 110

Query: 658 PPPPRXXXXPXGGXXPXPPHXXAXPTPPXCXPXLPXLPPXXP 783
           PP PR    P        P     P PP   P L   P   P
Sbjct: 111 PPHPRLRREPEAEPGNNRPVYIPQPRPP--HPRLRREPEAEP 150



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 21/86 (24%), Positives = 22/86 (25%), Gaps = 2/86 (2%)
 Frame = +1

Query: 490 PXPPPPXPPXXGGXPXRXFPPXNXXX--PRPPXXPPPAXXXXXFFXXXPAPPPXAXPXPP 663
           P P PP P           P  N     P+P    P              P     P PP
Sbjct: 79  PQPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 138

Query: 664 PPRXXXXPXGGXXPXPPHXXAXPTPP 741
            PR    P        P     P PP
Sbjct: 139 HPRLRREPEAEPGNNRPVYIPQPRPP 164


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 637 PPXAXPXPPPP 669
           PP   P PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect(2) = 0.63
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 429 TPPXXPPPPP 458
           TPP   PPPP
Sbjct: 337 TPPKPAPPPP 346



 Score = 21.8 bits (44), Expect(2) = 0.63
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 435 PXXPPPPPS 461
           P  PPPPPS
Sbjct: 341 PAPPPPPPS 349


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 499 PPPXPPXXGGXPXRXFPPXNXXXPRPPXXPPPA 597
           P P P      P R  PP     P PP  PP A
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGP-PPGGPPGA 54



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +3

Query: 708 SPTPPXXPHPPXVXPXPPXTTPXXPPP 788
           SP  P    PP     PP   P   PP
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/19 (52%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
 Frame = +3

Query: 411 PPXPKXTPPXXPPP--PPS 461
           PP P   PP   PP  PPS
Sbjct: 39  PPNPSQGPPPGGPPGAPPS 57



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +3

Query: 702 PXSPTPPXXPHPPXVXPXPPXTTPXXPPPPLSXXPGXPGPPPXP 833
           P S  P   P P      P   +P  P P     PG  GPP  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSP--PNPSQGPPPG--GPPGAP 55



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/34 (29%), Positives = 11/34 (32%)
 Frame = +1

Query: 652 PXPPPPRXXXXPXGGXXPXPPHXXAXPTPPXCXP 753
           P P P +    P  G  P P        PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 12/45 (26%), Positives = 12/45 (26%)
 Frame = +3

Query: 639 PXRGXXTPXPXXGXXPXXGXXPXSPTPPXXPHPPXVXPXPPXTTP 773
           P  G   P P     P        P P   P P      PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -1

Query: 832 GXGGGPGXPGXXERGGGGXXGVVXG 758
           G  GG    G    GGGG  G+  G
Sbjct: 33  GASGGSIVVGANNGGGGGGLGIASG 57


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 484  RXPXPPPPXPPXXGG 528
            R   PPPP PP   G
Sbjct: 1351 RQQQPPPPPPPPSSG 1365



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 435  PXXPPPPPS 461
            P  PPPPPS
Sbjct: 1355 PPPPPPPPS 1363


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 24  LTYYXGXPXNDLNCWYFFFFLTPARGSPFSEG*LDPDMIRYIDEFGQTTTR 176
           +T + G P + LN WY      PA   P + G L  + + Y  E G    R
Sbjct: 419 ITQWQGNPISPLNDWYSLASSWPAL-VPLALGFLAGE-LTYSQEIGDRQER 467


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 739 GGWGXXGGVGXXGXXP 692
           GG+G  GG+G  G  P
Sbjct: 23  GGFGGFGGLGGRGKCP 38


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 739 GGWGXXGGVGXXGXXP 692
           GG+G  GG+G  G  P
Sbjct: 23  GGFGGFGGLGGRGKCP 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,979
Number of Sequences: 438
Number of extensions: 11073
Number of successful extensions: 30
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)