Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_C24
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 0.94
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 0.95
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.8
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 3.6
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 4.8
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 6.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 6.4
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 6.4
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 26 8.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 8.4
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect(2) = 0.94
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 827 PPPPXPPPP 853
PPPP PPPP
Sbjct: 945 PPPPPPPPP 953
Score = 21.0 bits (42), Expect(2) = 0.94
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2
Query: 806 LTCPXSXPPPPXP 844
+T P PPPP P
Sbjct: 902 ITHPTPPPPPPLP 914
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 827 PPPPXPPPP 853
PPPP PPPP
Sbjct: 775 PPPPPPPPP 783
Score = 24.2 bits (50), Expect(2) = 0.95
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 815 PXSXPPPPXPPPP 853
P PPP PPPP
Sbjct: 756 PIMGGPPPPPPPP 768
Score = 23.0 bits (47), Expect(2) = 0.95
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = +2
Query: 833 PPXPPPPXXXXXXXVPXXXGXPP 901
PP PPPP P PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +1
Query: 805 LNXPXFPXPPXXXPPPPXXXXXPGXXGPXPSP 900
++ P P PP PPPP P P P
Sbjct: 1702 MSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 126 PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 221
P H+TT R I +I I PS+LT G +C HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +2
Query: 200 ESMLDTHSLWSNLANEMQHLDNMMKELSLNFPSIINEGRVEGDKYQISIHLPGYEQKDIN 379
E + + +W+++ +MQ D ++L F I N G++ Q +I L G + ++
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162
Query: 380 VKAKN 394
K N
Sbjct: 163 SKKLN 167
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 827 PPPPXPPPP 853
PPPP PPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 827 PPPPXPPPP 853
PPPP PPPP
Sbjct: 189 PPPPPPPPP 197
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 203 SMLDTHSLWSNLANEMQHLDNMMKELSLNFP 295
SM T LW NL N++ H DN ++E SLN P
Sbjct: 391 SMDTTVRLW-NLDNDVLHKDNPVEE-SLNSP 419
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 152 SHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNM-MKELSLNFP 295
SH+ HY +P + + + NL + H+D +K L LN P
Sbjct: 214 SHFHSDHYGGLTPKWKHGPIYCSEVTGNLLINVMHVDEQYVKRLKLNQP 262
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.8 bits (54), Expect = 8.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 815 PXSXPPPPXPPP 850
P + PPPP PPP
Sbjct: 1091 PSAVPPPPPPPP 1102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,822
Number of Sequences: 5004
Number of extensions: 60374
Number of successful extensions: 258
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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