Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_C23
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0149 - 20636801-20637044,20637859-20639180                       33   0.31 
03_01_0651 - 4767836-4767856,4768111-4768457,4768582-4768751,476...    30   2.9  
07_03_1706 + 28855669-28855801,28856013-28856044,28856158-288562...    29   3.8  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   8.7  

>11_06_0149 - 20636801-20637044,20637859-20639180
          Length = 521

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 153 AVFRFLKMDLCRQDKPTRRRSYEDGGLNEPKKNQKNTNNIS 275
           + F  L +   R  KP+RRR    GG   PKK  K+ N ++
Sbjct: 3   SAFHSLLLPAIRNPKPSRRRGRGRGGSKRPKKTTKSKNRLA 43


>03_01_0651 -
           4767836-4767856,4768111-4768457,4768582-4768751,
           4768848-4769162,4769758-4769882,4770743-4771036
          Length = 423

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 217 YDLLRVGLSCLHRSIFKKRNTASTGRPAVTGE*SR*TRGSFLPMPKP-WCCHYRDV 53
           YDLL++G S  H    K  +   T + A+T      T  SFL M +P WC   +D+
Sbjct: 310 YDLLKIGGSDFHGRGGKDESDIGTVKLAIT------TLCSFLKMARPIWCSAMKDI 359


>07_03_1706 +
           28855669-28855801,28856013-28856044,28856158-28856229,
           28856631-28856727,28857195-28857256,28857726-28858024,
           28858306-28858663,28858692-28859297,28859500-28859698,
           28860039-28860101,28860603-28860673
          Length = 663

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 189 QDKPTRRRSYEDGGLNEPKKNQKNTNNISKKP 284
           QD P +      GGL + K+  ++T+ IS KP
Sbjct: 79  QDAPKKTPKVNSGGLQKHKQTDRHTSRISTKP 110


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 110 SPTSFSCYCWSPCGCCIPLFKNGSMQTR*ANSKEIIRG 223
           S +SF  + W P GC +P F    M  R  N + +  G
Sbjct: 91  SNSSFRYWRWQPHGCQLPKFNATDMLERSRNGRIVFAG 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,073,242
Number of Sequences: 37544
Number of extensions: 317353
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)