Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_C22
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48045-9|CAA88099.4|  309|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    29   4.4  

>Z48045-9|CAA88099.4|  309|Caenorhabditis elegans Hypothetical
           protein C41C4.2 protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 203 VLLTIPSIMGVLYLLAFQVVVLRIECIWCTLMLCLQVLE-FIFASMF 340
           VL +  SI G+   L F   ++    +WC+L LC   +  F++  +F
Sbjct: 93  VLTSTNSIAGIFGSLLFHYELIFDTAVWCSLGLCFNFVSIFLYVILF 139


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 345 LQCVEDHHMIK-SCKKIFLGKFCTKLSKKL 431
           L+C ED+  +K S  ++F+GK  TK SKK+
Sbjct: 290 LKCREDNLEVKASSMRMFIGKMMTKKSKKI 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,338,596
Number of Sequences: 27780
Number of extensions: 351500
Number of successful extensions: 701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)