Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_C21
         (950 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.059
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.8  
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    26   9.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.1 bits (72), Expect = 0.059
 Identities = 31/122 (25%), Positives = 37/122 (30%)
 Frame = +3

Query: 498 PVSXXXPXGXPPLPXPXVPRXXXXXXXXXXXXXXXXXXXXXXXPXPXXISXPLRSPXPPX 677
           P+S       PP P P +P                        P P   S P  +P  P 
Sbjct: 378 PLSSSRAVSNPPAPPPAIP-----GRSAPALPPLGNASRTSTPPVPTPPSLPPSAP--PS 430

Query: 678 RXPDPPPXAP*XRPXXPPXXGXXTSPPXXPFXVPXXXXLXTSXXLFXXPXXSPXXPPXTP 857
             P  PP  P   P  PP       PP  P   P    +  +  L   P  +P  PP   
Sbjct: 431 LPPSAPPSLPMGAPAAPPL------PPSAPIAPPLPAGMPAAPPL---PPAAPAPPPAPA 481

Query: 858 PA 863
           PA
Sbjct: 482 PA 483



 Score = 29.1 bits (62), Expect = 0.96
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +3

Query: 642 ISXPLRSPXPPXRXPDPPPXAP*XRPXXPPXXGXXTSPPXXP 767
           I   + S  PP R P     AP   P  PP  G  +SPP  P
Sbjct: 232 IPPSIPSSRPPERVPSLSAPAP--PPIPPPSNGTVSSPPNSP 271



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
 Frame = +3

Query: 645 SXPLRSPXPPXRXPDPP--PXAP*XRPXXPPXXGXXTSPPXXPFXVP 779
           S P+ +P  P   P  P  P  P   P  PP      +PP  P   P
Sbjct: 438 SLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 650 PTPLTRSPXPXXGPXSPRXLXPPPXPS 730
           P+P +  P P   P  P  L PP  P+
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPA 178


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 24/95 (25%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
 Frame = +3

Query: 483  SSPXXPVSXXXPXGXPPLPXPXVPRXXXXXXXXXXXXXXXXXXXXXXXPXPXXISXPLRS 662
            ++P  PV    P G PP+P P V                         P P     P+  
Sbjct: 1129 AAPPVPV----PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV-PAPSSGIPPVPK 1183

Query: 663  PX---PPXRXPDPPPXAP*XRPXXPPXXGXXTSPP 758
            P    PP   P   P  P      PP     T+PP
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +3

Query: 627 PXPXXISXPLRSPXPPXRXPDPPPXAP*XRPXXPP 731
           P P     P+  P P    P PPP  P      PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = +3

Query: 654 LRSPXPPXRXPDPPPXAP*XRPXXPPXXGXXTSPPXXP 767
           L+SP PP      P  AP   P  PP       PP  P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +2

Query: 632 PXPHFXPTPLTRSPXPXXGPXSPRXLXPPPXP 727
           P P   P P+   P P   P       PPP P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 100 AFVVVRLFITRHFCVKTWFRV 162
           AF  VR  +T+ FC   WF V
Sbjct: 50  AFTGVRADVTKGFCTSPWFTV 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,419
Number of Sequences: 5004
Number of extensions: 25502
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)