Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_C18
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    25   1.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.9  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +2

Query: 293 YNREIFNDDRGKLTGQAYGTRVLGPAGDSTNYGG---RLDWANKXAEAAIDINRQIGGR 460
           Y + ++  D+  +TG AYG   + P   S  + G     ++ N   +   ++ R  GGR
Sbjct: 60  YKQRVY--DKNGMTGDAYGGLNIRPGQPSRQHAGFEFGKEYKNGFIKGQSEVQRGPGGR 116


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 210 SPGTNKWEEGRSSARWAKTMMGFLVKPV 293
           S GTN W+ GR  +   + ++  LV  V
Sbjct: 264 SGGTNHWDSGRRKSAAQRNVIRMLVAVV 291


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 223 TSGRREGLRHAGPKR 267
           T GR  GLR+ GPK+
Sbjct: 421 TYGRNAGLRYRGPKQ 435


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 824  NXNXMGHPXPPPPXP 868
            N    G P PPPP P
Sbjct: 1850 NIPVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,392
Number of Sequences: 438
Number of extensions: 4379
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)