Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_C13
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 633 TPXPPXPPPPP 665
           TP  P PPPPP
Sbjct: 337 TPPKPAPPPPP 347



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 600 PXPXPPXPPPXTPXP 644
           P P PP PPP +  P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 636 PXPPXPPPPPXXXPP 680
           P P  PPPPP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 627 PXTPXPPXPPP 659
           P  P PP PPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 642  PPXPPPPP 665
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 679 GGXXXGGGGGXGGXGVXGGGXGG 611
           GG   G  GG    G   GG GG
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGG 50


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 573 PPLXPXPXXPXPXPPXPPPXTPXPPXPPPPPXXXPP 680
           P   P P      P    P  P    PP  P   PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/30 (36%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
 Frame = +3

Query: 591 PXXPXPXPPXPPPXTPXPPXPP-PPPXXXP 677
           P  P    P  P   P P  PP  PP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 621  PPPXTPXPPXPPP 659
            P   +P PP PPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 627  PXTPXPPXPPPPP 665
            P +  P  PPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,590
Number of Sequences: 438
Number of extensions: 4659
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)