Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_C11
(879 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 165 4e-41
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 165 4e-41
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 165 4e-41
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 165 4e-41
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 165 4e-41
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 165 4e-41
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 165 4e-41
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 165 4e-41
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 165 4e-41
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 163 1e-40
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 163 1e-40
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 118 7e-27
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 105 6e-23
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 97 1e-20
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 97 1e-20
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 96 3e-20
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 96 3e-20
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 78 7e-15
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 75 5e-14
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 35 0.088
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 35 0.088
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 32 0.62
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.1
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 31 1.1
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 31 1.1
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 31 1.1
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 30 2.5
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 5.8
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 7.7
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 165 bits (401), Expect = 4e-41
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 422
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 423 VLLTEAPLNPKANR 464
VLLTEAPLNPKANR
Sbjct: 104 VLLTEAPLNPKANR 117
Score = 151 bits (365), Expect = 8e-37
Identities = 71/75 (94%), Positives = 74/75 (98%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAIL 645
EKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYAL HAIL
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 646 RLDLAGRDLTDYLMK 690
RLDLAGRDLTDYLMK
Sbjct: 178 RLDLAGRDLTDYLMK 192
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +2
Query: 113 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 241
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/59 (54%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 705 RGYSFTTTAXKGIVRDIK-KNPXMSPSXXTXXGHRWRFXSLXKSYELPDGQVITSGKKR 878
RGYSFTTTA + IVRDIK K ++ SL KSYELPDGQVIT G +R
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 165 bits (401), Expect = 4e-41
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 422
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 423 VLLTEAPLNPKANR 464
VLLTEAPLNPKANR
Sbjct: 104 VLLTEAPLNPKANR 117
Score = 151 bits (366), Expect = 6e-37
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAIL 645
EKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYAL HAIL
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 646 RLDLAGRDLTDYLMK 690
RLDLAGRDLTDYLMK
Sbjct: 178 RLDLAGRDLTDYLMK 192
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +2
Query: 113 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 241
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/59 (54%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 705 RGYSFTTTAXKGIVRDIK-KNPXMSPSXXTXXGHRWRFXSLXKSYELPDGQVITSGKKR 878
RGYSFTTTA + IVRDIK K ++ SL KSYELPDGQVIT G +R
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 165 bits (401), Expect = 4e-41
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 422
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 423 VLLTEAPLNPKANR 464
VLLTEAPLNPKANR
Sbjct: 104 VLLTEAPLNPKANR 117
Score = 151 bits (365), Expect = 8e-37
Identities = 71/75 (94%), Positives = 74/75 (98%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAIL 645
EKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYAL HAIL
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 646 RLDLAGRDLTDYLMK 690
RLDLAGRDLTDYLMK
Sbjct: 178 RLDLAGRDLTDYLMK 192
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +2
Query: 113 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 241
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/59 (54%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 705 RGYSFTTTAXKGIVRDIK-KNPXMSPSXXTXXGHRWRFXSLXKSYELPDGQVITSGKKR 878
RGYSFTTTA + IVRDIK K ++ SL KSYELPDGQVIT G +R
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 165 bits (401), Expect = 4e-41
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 422
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 423 VLLTEAPLNPKANR 464
VLLTEAPLNPKANR
Sbjct: 104 VLLTEAPLNPKANR 117
Score = 151 bits (365), Expect = 8e-37
Identities = 71/75 (94%), Positives = 74/75 (98%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAIL 645
EKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYAL HAIL
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 646 RLDLAGRDLTDYLMK 690
RLDLAGRDLTDYLMK
Sbjct: 178 RLDLAGRDLTDYLMK 192
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +2
Query: 113 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 241
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/59 (54%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 705 RGYSFTTTAXKGIVRDIK-KNPXMSPSXXTXXGHRWRFXSLXKSYELPDGQVITSGKKR 878
RGYSFTTTA + IVRDIK K ++ SL KSYELPDGQVIT G +R
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 165 bits (401), Expect = 4e-41
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 422
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 423 VLLTEAPLNPKANR 464
VLLTEAPLNPKANR
Sbjct: 104 VLLTEAPLNPKANR 117
Score = 151 bits (365), Expect = 8e-37
Identities = 71/75 (94%), Positives = 74/75 (98%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAIL 645
EKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYAL HAIL
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 646 RLDLAGRDLTDYLMK 690
RLDLAGRDLTDYLMK
Sbjct: 178 RLDLAGRDLTDYLMK 192
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +2
Query: 113 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 241
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/59 (54%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 705 RGYSFTTTAXKGIVRDIK-KNPXMSPSXXTXXGHRWRFXSLXKSYELPDGQVITSGKKR 878
RGYSFTTTA + IVRDIK K ++ SL KSYELPDGQVIT G +R
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 165 bits (401), Expect = 4e-41
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 422
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 423 VLLTEAPLNPKANR 464
VLLTEAPLNPKANR
Sbjct: 104 VLLTEAPLNPKANR 117
Score = 151 bits (366), Expect = 6e-37
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAIL 645
EKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYAL HAIL
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 646 RLDLAGRDLTDYLMK 690
RLDLAGRDLTDYLMK
Sbjct: 178 RLDLAGRDLTDYLMK 192
Score = 95.9 bits (228), Expect = 3e-20
Identities = 41/43 (95%), Positives = 43/43 (100%)
Frame = +2
Query: 113 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 241
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/59 (54%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 705 RGYSFTTTAXKGIVRDIK-KNPXMSPSXXTXXGHRWRFXSLXKSYELPDGQVITSGKKR 878
RGYSFTTTA + IVRDIK K ++ SL KSYELPDGQVIT G +R
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 165 bits (401), Expect = 4e-41
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 422
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 423 VLLTEAPLNPKANR 464
VLLTEAPLNPKANR
Sbjct: 104 VLLTEAPLNPKANR 117
Score = 151 bits (365), Expect = 8e-37
Identities = 71/75 (94%), Positives = 74/75 (98%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAIL 645
EKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYAL HAIL
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 646 RLDLAGRDLTDYLMK 690
RLDLAGRDLTDYLMK
Sbjct: 178 RLDLAGRDLTDYLMK 192
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +2
Query: 113 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 241
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/59 (54%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 705 RGYSFTTTAXKGIVRDIK-KNPXMSPSXXTXXGHRWRFXSLXKSYELPDGQVITSGKKR 878
RGYSFTTTA + IVRDIK K ++ SL KSYELPDGQVIT G +R
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 165 bits (401), Expect = 4e-41
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 422
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 30 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 89
Query: 423 VLLTEAPLNPKANR 464
VLLTEAPLNPKANR
Sbjct: 90 VLLTEAPLNPKANR 103
Score = 151 bits (365), Expect = 8e-37
Identities = 71/75 (94%), Positives = 74/75 (98%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAIL 645
EKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYAL HAIL
Sbjct: 104 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 163
Query: 646 RLDLAGRDLTDYLMK 690
RLDLAGRDLTDYLMK
Sbjct: 164 RLDLAGRDLTDYLMK 178
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +2
Query: 167 KAGFAGDDAPRAVFPSIVGRPRHQG 241
+AGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQG 29
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/59 (54%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 705 RGYSFTTTAXKGIVRDIK-KNPXMSPSXXTXXGHRWRFXSLXKSYELPDGQVITSGKKR 878
RGYSFTTTA + IVRDIK K ++ SL KSYELPDGQVIT G +R
Sbjct: 183 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 241
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 165 bits (401), Expect = 4e-41
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 422
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 423 VLLTEAPLNPKANR 464
VLLTEAPLNPKANR
Sbjct: 104 VLLTEAPLNPKANR 117
Score = 151 bits (365), Expect = 8e-37
Identities = 71/75 (94%), Positives = 74/75 (98%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAIL 645
EKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYAL HAIL
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 646 RLDLAGRDLTDYLMK 690
RLDLAGRDLTDYLMK
Sbjct: 178 RLDLAGRDLTDYLMK 192
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +2
Query: 113 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 241
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/59 (54%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 705 RGYSFTTTAXKGIVRDIK-KNPXMSPSXXTXXGHRWRFXSLXKSYELPDGQVITSGKKR 878
RGYSFTTTA + IVRDIK K ++ SL KSYELPDGQVIT G +R
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 163 bits (397), Expect = 1e-40
Identities = 71/74 (95%), Positives = 74/74 (100%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 422
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELR+APEEHP
Sbjct: 43 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHP 102
Query: 423 VLLTEAPLNPKANR 464
VLLTEAPLNPK+NR
Sbjct: 103 VLLTEAPLNPKSNR 116
Score = 145 bits (351), Expect = 4e-35
Identities = 70/83 (84%), Positives = 74/83 (89%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAIL 645
EKMTQIMFETFN+PAMYV IQAVLSLYASGRTTGIVLD+GDGV+HTVPIYEGYAL HAI
Sbjct: 117 EKMTQIMFETFNTPAMYVNIQAVLSLYASGRTTGIVLDTGDGVTHTVPIYEGYALPHAIQ 176
Query: 646 RLDLAGRDLTDYLMKDPHREGVT 714
RLDLAGRDLTDY+MK G T
Sbjct: 177 RLDLAGRDLTDYMMKILTERGYT 199
Score = 86.6 bits (205), Expect = 2e-17
Identities = 37/41 (90%), Positives = 41/41 (100%)
Frame = +2
Query: 119 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 241
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
Score = 54.0 bits (124), Expect = 1e-07
Identities = 31/59 (52%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +3
Query: 705 RGYSFTTTAXKGIVRDIK-KNPXMSPSXXTXXGHRWRFXSLXKSYELPDGQVITSGKKR 878
RGY+FTTTA + IVRDIK K ++ + SL KSYELPDGQVIT G +R
Sbjct: 196 RGYTFTTTAEREIVRDIKEKLCYVAHDFESELAAAASSSSLEKSYELPDGQVITIGNER 254
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 163 bits (397), Expect = 1e-40
Identities = 72/73 (98%), Positives = 73/73 (100%)
Frame = +3
Query: 246 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 425
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 60
Query: 426 LLTEAPLNPKANR 464
LLTEAPLNPKANR
Sbjct: 61 LLTEAPLNPKANR 73
Score = 151 bits (365), Expect = 8e-37
Identities = 71/75 (94%), Positives = 74/75 (98%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAIL 645
EKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYAL HAIL
Sbjct: 74 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 133
Query: 646 RLDLAGRDLTDYLMK 690
RLDLAGRDLTDYLMK
Sbjct: 134 RLDLAGRDLTDYLMK 148
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/59 (54%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 705 RGYSFTTTAXKGIVRDIK-KNPXMSPSXXTXXGHRWRFXSLXKSYELPDGQVITSGKKR 878
RGYSFTTTA + IVRDIK K ++ SL KSYELPDGQVIT G +R
Sbjct: 153 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 211
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 118 bits (283), Expect = 7e-27
Identities = 53/81 (65%), Positives = 67/81 (82%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAIL 645
E+ +I FETFN PA+Y+ +QAVLSLYA+GRTTG+VLDSGDGV+H VPI +G+A+ HAI
Sbjct: 121 ERSAEIFFETFNVPALYIQMQAVLSLYATGRTTGVVLDSGDGVTHAVPIVKGFAMKHAIQ 180
Query: 646 RLDLAGRDLTDYLMKDPHREG 708
R+DLAGRD+T+YL REG
Sbjct: 181 RMDLAGRDVTEYLRVLLRREG 201
Score = 98.7 bits (235), Expect = 5e-21
Identities = 41/75 (54%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEH 419
VM G D ++G +A+S RG+ +++YP+EHGI+ NW DMEKIW + F ++L++ PEEH
Sbjct: 46 VMAGGLDGDIFIGPKAESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEH 105
Query: 420 PVLLTEAPLNPKANR 464
PVLLT+APLNP NR
Sbjct: 106 PVLLTDAPLNPLKNR 120
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Frame = +2
Query: 119 DDDVAA---LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 235
D DV A +V+DNGSG+ KAGFAG+ P+ F + VGRP++
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKY 43
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 105 bits (251), Expect = 6e-23
Identities = 46/75 (61%), Positives = 60/75 (80%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAIL 645
EKM Q+MFE + ++YVA+QAVL+LYA G TG+V+DSGDGV+H P+YEG+AL H
Sbjct: 121 EKMFQVMFEQYGFNSIYVAVQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFALHHLTR 180
Query: 646 RLDLAGRDLTDYLMK 690
RLD+AGRD+T YL+K
Sbjct: 181 RLDIAGRDITKYLIK 195
Score = 77.4 bits (182), Expect = 1e-14
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Frame = +3
Query: 180 PATTRPAPSSRPSWVALATRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDD 359
PA P+ RP + +T+ V + KD VG+E R +L + YP+++GI+ NWDD
Sbjct: 28 PAHIFPSMVGRP--IVRSTQRVG-NIEIKDLMVGEECSQLRQMLDINYPMDNGIVRNWDD 84
Query: 360 MEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANR 464
M +W HTF E L + P+E +LLTE PLNP +NR
Sbjct: 85 MAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNR 120
Score = 45.6 bits (103), Expect = 5e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +2
Query: 137 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 229
+VVDNG+G K G+AG + P +FPS+VGRP
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRP 39
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +2
Query: 113 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 241
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 95.1 bits (226), Expect = 6e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKI 371
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +2
Query: 113 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 241
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 89.4 bits (212), Expect = 3e-18
Identities = 39/40 (97%), Positives = 40/40 (100%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 362
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDM
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 83
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +2
Query: 113 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 241
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 95.1 bits (226), Expect = 6e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKI 371
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +2
Query: 113 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 241
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 95.1 bits (226), Expect = 6e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKI 371
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 78.2 bits (184), Expect = 7e-15
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 8/81 (9%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEG 621
E +IMFE+FN P +Y+A+QAVL+L AS + TG+V+DSGDGV+H +P+ +G
Sbjct: 131 EYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVIDSGDGVTHCIPVADG 190
Query: 622 YALAHAILRLDLAGRDLTDYL 684
Y + I + +AGRD+T ++
Sbjct: 191 YVIGSCIKHIPIAGRDITYFI 211
Score = 74.5 bits (175), Expect = 9e-14
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +3
Query: 243 VMVGMGQKDSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEH 419
V G+ D ++GDEA S T+KYPI HGI+ +WD ME+ W + LR PE+H
Sbjct: 56 VGAGIDDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDH 115
Query: 420 PVLLTEAPLNPKANR 464
LLTE PLN NR
Sbjct: 116 FFLLTEPPLNTPENR 130
Score = 35.5 bits (78), Expect = 0.050
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 113 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 220
M + A V+DNG+G K G+AG+ P+ + PS +
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAI 36
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 75.4 bits (177), Expect = 5e-14
Identities = 32/73 (43%), Positives = 51/73 (69%)
Frame = +1
Query: 466 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAIL 645
EK+T+IMFE F PA Y++ VLS +A GRT G+++DSG + VP+++GYA+ HA++
Sbjct: 140 EKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRTHGLMVDSGATQTSVVPVFDGYAVTHAVV 199
Query: 646 RLDLAGRDLTDYL 684
+ + G +T+ L
Sbjct: 200 KCPIGGDLITEQL 212
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 327 IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 464
++ G+I +W+ EKI H++ N L P EHPVL +E+ N +A R
Sbjct: 94 MKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLFSESSWNDRARR 139
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 122 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 220
D+V+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +1
Query: 469 KMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHAILR 648
++ QI E + + Q L LYA TTG+V+D G+ V + VP+ +GY + AI
Sbjct: 291 ELLQICLEDIKFQSAGITRQPSLILYAYDVTTGVVVDIGERV-NIVPVIDGYVVESAICS 349
Query: 649 LDLAGRDLTDYLMK--DPHREGVTRSPPPLXR 738
+ + + D L H +G+ P+ +
Sbjct: 350 IPYGSQQMGDSLRASLSAHNKGLYAFQSPVEK 381
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 34.7 bits (76), Expect = 0.088
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 261 QKDSYVGDEAQSKRGILTLKY--PIEHGIITNWDDMEKIWHHTF 386
+K +V E + +L Y PIE G + NWD ++IW TF
Sbjct: 39 KKRVFVAHEQEECSDKFSLFYVRPIERGYVVNWDTQQQIWEKTF 82
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 34.7 bits (76), Expect = 0.088
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 261 QKDSYVGDEAQSKRGILTLKY--PIEHGIITNWDDMEKIWHHTF 386
+K +V E + +L Y PIE G + NWD ++IW TF
Sbjct: 39 KKRVFVAHEQEECSDKFSLFYVRPIERGYVVNWDTQQQIWEKTF 82
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 31.9 bits (69), Expect = 0.62
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 593 TPSPESSTIPVVRPEAYSESTAWMATYMAGEL 498
TP P SST+PVV P ++ T +Y+A L
Sbjct: 865 TPQPLSSTMPVVAPSTSTQPTPTTGSYLANTL 896
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 31.5 bits (68), Expect = 0.82
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 144 STMAPACARPVSPATTRPAPSSRP 215
+T AP PATTRPAP+S+P
Sbjct: 317 ATRAPPATTRAPPATTRPAPASQP 340
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 291 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 157
GP P S P +P +P G P G +GAS+P +P P
Sbjct: 105 GPPGPGGSPGKPGKPGKP---GAPGAPGNPGKGASAPCEPVTQPP 146
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 291 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 157
GP P S P +P +P G P G +GAS+P +P P
Sbjct: 105 GPPGPGGSPGKPGKPGKP---GAPGAPGNPGKGASAPCEPVTQPP 146
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 291 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 157
GP P S P +P +P G P G +GAS+P +P P
Sbjct: 105 GPPGPGGSPGKPGKPGKP---GAPGAPGNPGKGASAPCEPVTQPP 146
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 291 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 157
GP P S P +P +P G P G +GAS+P +P P
Sbjct: 105 GPPGPGGSPGKPGKPGKP---GAPGAPGNPGKGASAPCEPVTQPP 146
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 291 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPA 178
GPR P P +P P G P G+ +RG P+
Sbjct: 170 GPRGPAGDAGSPGQPGHPGSPGNPGRGGQRSRGLPGPS 207
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 309 GYLSCSGPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 157
G C P P P +P P G P G + +GA++P +P+ P
Sbjct: 112 GCTGCCNPGPPGPG-GRPGKPGTPGKPGAPGNPGASGKGAAAPCEPSTPPP 161
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +2
Query: 227 PRHQGRDGRYGPERL--LRG*RGPEQERYPHSEVPHRARYHH 346
PR G GR+GP G GP + P R +HH
Sbjct: 376 PRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHGHHH 417
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +3
Query: 135 RL*STMAPACARPVSPATTRPAPSSRPSWVALATR 239
RL S +AP A P S A TR APS + VA R
Sbjct: 231 RLSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRR 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,698,774
Number of Sequences: 27780
Number of extensions: 404380
Number of successful extensions: 1704
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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