Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_C11
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              36   5e-04
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.53 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.5  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 35.9 bits (79), Expect = 5e-04
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +3

Query: 819 SLXKSYELPDGQVITSGKKR 878
           SL KSYELPDGQVIT G +R
Sbjct: 10  SLEKSYELPDGQVITIGNER 29


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 593 SPTPYPSTKVTLWPTPSSVWTWLVAT*PTTS*KILTEKGLLVHHH 727
           S T  P+T  T   T ++      AT  TT+  ++ ++ L  HHH
Sbjct: 99  SSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHH 143


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 404 DTQLIVEGVVPDLLHVI 354
           + Q +V+ V PD+LH+I
Sbjct: 21  NNQTVVDKVPPDMLHLI 37


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +3

Query: 630 GPRHPPSGLGWSRLDRLPHERSS 698
           GP H   G G S +   PH   S
Sbjct: 413 GPHHHTMGHGHSHIHATPHHHHS 435


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,519
Number of Sequences: 438
Number of extensions: 4864
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)