Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_C09
         (889 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O18640 Cluster: Guanine nucleotide-binding protein subu...    45   0.003
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    44   0.007
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    43   0.012
UniRef50_P63244 Cluster: Guanine nucleotide-binding protein subu...    36   1.4  
UniRef50_Q6FW89 Cluster: Similar to sp|P38011 Saccharomyces cere...    35   2.4  
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    33   9.7  
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    33   9.7  

>UniRef50_O18640 Cluster: Guanine nucleotide-binding protein subunit
           beta-like protein; n=18; Eukaryota|Rep: Guanine
           nucleotide-binding protein subunit beta-like protein -
           Drosophila melanogaster (Fruit fly)
          Length = 318

 Score = 44.8 bits (101), Expect = 0.003
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = +2

Query: 44  ISLAWST*WTNLILLGYSDNTIRVWQVSISA 136
           +SLAWST    L   GYSDNTIRVWQVS+SA
Sbjct: 288 LSLAWSTDGQTLFA-GYSDNTIRVWQVSVSA 317


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 43.6 bits (98), Expect = 0.007
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +2

Query: 572 SALMNRPTXGXRRFAYWALFR 634
           +ALMNRPT G RRFAYWALFR
Sbjct: 25  AALMNRPTRGERRFAYWALFR 45


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.7 bits (96), Expect = 0.012
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +2

Query: 377 DPDMIRYIDEFGQTTTXMQ 433
           DPDMIRYIDEFGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P63244 Cluster: Guanine nucleotide-binding protein subunit
           beta-2-like 1; n=178; Eukaryota|Rep: Guanine
           nucleotide-binding protein subunit beta-2-like 1 - Homo
           sapiens (Human)
          Length = 317

 Score = 35.9 bits (79), Expect = 1.4
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 47  SLAWST*WTNLILLGYSDNTIRVWQVSISAR 139
           SLAWS     L   GY+DN +RVWQV+I  R
Sbjct: 288 SLAWSADGQTLFA-GYTDNLVRVWQVTIGTR 317


>UniRef50_Q6FW89 Cluster: Similar to sp|P38011 Saccharomyces
           cerevisiae YMR116c ASC1; n=1; Candida glabrata|Rep:
           Similar to sp|P38011 Saccharomyces cerevisiae YMR116c
           ASC1 - Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 277

 Score = 35.1 bits (77), Expect = 2.4
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = +2

Query: 44  ISLAWST*WTNLILLGYSDNTIRVWQVSIS 133
           +SLAWS+    L   GY+DN IRVWQV  S
Sbjct: 248 VSLAWSSDGQTLFA-GYTDNVIRVWQVMTS 276


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 33.1 bits (72), Expect = 9.7
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +2

Query: 659 RSVVRLRRTGISSLKRRXYGYPTESGDNAGK 751
           RSVVRLRR  +S+  +      TESGDNAGK
Sbjct: 28  RSVVRLRRA-VSAHSKAVIRLSTESGDNAGK 57


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 33.1 bits (72), Expect = 9.7
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = -3

Query: 620 NTQTAXPRALADSLMQ 573
           NTQTA PRALADSLMQ
Sbjct: 333 NTQTASPRALADSLMQ 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 657,543,815
Number of Sequences: 1657284
Number of extensions: 10432394
Number of successful extensions: 19439
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19431
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)