Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_C09
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    30   0.38 
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    30   0.51 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   1.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   3.6  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   6.2  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.2  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 47  SLAWST*WTNLILLGYSDNTIRVWQVSISAR 139
           SL   + + N ILLG+SD  +++W + +S R
Sbjct: 165 SLLHPSTYLNKILLGFSDGALQIWNLRVSKR 195


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +2

Query: 44  ISLAWST*WTNLILLGYSDNTIRVWQVS 127
           ISL WS     L   G++DN IRVWQV+
Sbjct: 287 ISLTWSPDGQTLFS-GWTDNLIRVWQVT 313


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = +2

Query: 605  RRFAYWALFRLPRSX-TXWRSVVRLRRTGISSLKRRXYGYPTESG 736
            R F  W      RS    W    RL RT I+  KRR  G P   G
Sbjct: 1540 REFIRWLSRGNSRSHINSWIGYCRLTRTRITGYKRRLLGVPVSKG 1584


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 605  RRFAYWALFRLPRSXTX-WRSVVRLRRTGISSLKRRXYGYPTE 730
            R F  W      RS    W    RL RT I+  KRR  G P++
Sbjct: 1566 REFIRWLSRGNSRSHANSWIGYCRLTRTRITGYKRRVLGQPSD 1608


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 61  YLMDKPYFAWLLR*YYKSVAGFHLSSISLIVNINFIYFCVLYS 189
           YL+ + Y++W  +  Y  +    +     I  + FIYFCV+Y+
Sbjct: 715 YLIRRGYYSWWKK--YNLITAAAMDCGVAIAGL-FIYFCVVYT 754


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 139 ISLIVNINFIYFCVLYSFLGMIDSK*FFYLYQFLTVLNYVKDENK*NCVNF 291
           ++ IV I ++Y   L +      +K F Y+ + ++ ++ +   +K NC NF
Sbjct: 36  LNTIVCIFYVYKIALCNEYIRFLAKCFLYILRCMSTVSLLSSAHKMNCCNF 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,556
Number of Sequences: 5004
Number of extensions: 45771
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)