Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_C07
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.36 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   0.74 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    28   1.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.5  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    27   4.5  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    27   4.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.5  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    26   5.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 793 IQXPPXXPXXXPPPPPPPP 849
           I  PP  P    PPPPPPP
Sbjct: 749 IPVPPPAPIMGGPPPPPPP 767



 Score = 29.9 bits (64), Expect = 0.48
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 802 PPXXPXXXPPPPPPPP 849
           PP      PPPPPPPP
Sbjct: 767 PPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 826 PPPPPPPP 849
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 802 PPXXPXXXPPPPPPPP 849
           PP       PPPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPP 781


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 0.74
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 826 PPPPPPP 846
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.8 bits (49), Expect(2) = 0.74
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 829 PPPPPPP 849
           PPPPPPP
Sbjct: 337 PPPPPPP 343


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 814 PXXXPPPPPPPP 849
           P   PPPPPPPP
Sbjct: 5   PPGNPPPPPPPP 16



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = +1

Query: 802 PPXXPXXXPP--PPPPPP 849
           PP  P   PP  PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 801 AXXPPXXXXPPPPPP 845
           A  PP    PPPPPP
Sbjct: 2   ASLPPGNPPPPPPPP 16


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 814  PXXXPPPPPPPP 849
            P   PPPPPPPP
Sbjct: 1091 PSAVPPPPPPPP 1102


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 814 PXXXPPPPPPPP 849
           P   PPPPPPPP
Sbjct: 942 PAFPPPPPPPPP 953


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 802  PPXXPXXXPPPPPPPP 849
            PP  P   PPPP  PP
Sbjct: 1707 PPPPPMSVPPPPSAPP 1722


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 826 PPPPPPPP 849
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 826 PPPPPPPP 849
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 826 PPPPPPPP 849
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 826 PPPPPPPP 849
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 265 DDMMKELSLKFPSIINEGRV 324
           DD+ K L+L FP++I + RV
Sbjct: 180 DDLQKHLTLSFPTLIAKSRV 199


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 102 CADCWRRSRPRHSTTMARHIGRITITTPFSPY-VRESMLDTHSLWSNLANEMQHLXRHDE 278
           C  C   S  +   +  +H GR    +P S   V + + D  +L +++ +  QH  R++E
Sbjct: 139 CPTCGSCSDSKKPQSNKKHRGRRVKHSPKSTLEVPDGIPDIKALSASMGSSSQHASRYNE 198

Query: 279 G 281
           G
Sbjct: 199 G 199


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 826 PPPPPPPP 849
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 116 AAVSAAPQYYHGSSHWPYHHYDPVQSL 196
           A  +A PQYY     +P  HY P Q L
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQPL 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,254,836
Number of Sequences: 5004
Number of extensions: 65017
Number of successful extensions: 434
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)