Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_C07
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.29 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 826  PPPPPPPP 849
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +1

Query: 763 LXXYXCXNSXIQXPPXXPXXXPPPPPP 843
           L  Y   N  +      P   PPPPPP
Sbjct: 322 LMEYCLVNIVLGDSDTPPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 826 PPPPPPPP 849
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +1

Query: 778 CXNSXIQXPPXXPXXXPPPPPPP 846
           C  + +      P    PPPPPP
Sbjct: 326 CLVNIVLGDSDTPPKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 826  PPPPPPPP 849
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 814  PXXXPPPPPPPP 849
            P    P PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 308 IMLGNFNDSSF---IMSSQVLHFVGKVGPKRMCVQHAFPNVRTE 186
           I+L N  D ++   IM+  +LH  GKV  K   +  +F  +  E
Sbjct: 107 IVLYNNADGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVE 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,438
Number of Sequences: 438
Number of extensions: 6033
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)