Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_C02
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    28   0.098
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.69 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.7  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 28.3 bits (60), Expect = 0.098
 Identities = 19/67 (28%), Positives = 22/67 (32%)
 Frame = +1

Query: 571 NPPLXLXXAXTPHPTXXXPPXAPPPPXXPLXXPPPXXXPXPXTPXTXSXXPPFXXXPPPP 750
           N P+ +     PHP     P A P    P+  P P   P P         P      P  
Sbjct: 101 NRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQP-RPPHPRLRREPEAEP--GNNRPVY 157

Query: 751 SPXPXPP 771
            P P PP
Sbjct: 158 IPQPRPP 164



 Score = 26.6 bits (56), Expect = 0.30
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = +1

Query: 544 RPPXXXLPXNPPLXLXXAXTPHPTXXXPPXAPPPPXXPLXXPPP 675
           R P      N P+ +     PHP     P A P    P+  P P
Sbjct: 118 REPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQP 161


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +2

Query: 779 PXPXPXXXPPXPPXXXXXPPXXXPXPXXPPPXP 877
           P P P   P  P       P   P P  PP  P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +1

Query: 670 PPXXXPXPXTPXTXSXXPPFXXXPPPPSPXPXP 768
           P    P P      S   P    PP PS  P P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +1

Query: 667 PPPXXXPXPXTPXTXSXXPPFXXXPPPPSPXPXPP 771
           P P     P  P   S  PP     PPP   P  P
Sbjct: 23  PQPSPHQSPQAPQRGS--PPNPSQGPPPGGPPGAP 55


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 739 PPPPSPXPXPP 771
           PP P+P P PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 838 PXXPXPPXPPP 870
           P  P PP PPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,378
Number of Sequences: 438
Number of extensions: 9164
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)