Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_C01
         (883 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    27   0.15 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    26   0.45 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   5.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.7  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +1

Query: 709 PXXXPXPPXXPPPXXLPXPPPXXXPPPPPXPXXPXXPPPPXXPXXXXXP 855
           P   P P    P   LP P        PP P  P  P PP  P     P
Sbjct: 149 PKYEPNPSIIDPGPALP-PTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = +1

Query: 628 PPPXXXXPLXXLXPXXPXXPXPXPXPXPXXXPXPPXXPPPXXLP 759
           P P    P   L P         P P     P PP  PP    P
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/37 (29%), Positives = 13/37 (35%)
 Frame = +2

Query: 620 PXPPXPXXXXPXANSPPXXXLXPXPLXXXPPXXLPXP 730
           P P  P       N PP   + P PL    P  +  P
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
 Frame = +2

Query: 617 PPXPPXPXXXXPXANSPPXXXLXPX--PLXXXPPXXLPXPPXXPPPXXSP 760
           P   P P    P    PP   L     PL   PP  LP PP   P   +P
Sbjct: 149 PKYEPNPSIIDPGPALPPAGFLCNNYLPLPQVPP--LPLPPIFAPTMINP 196


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 836 GXXGGGGXXGXXGXGGG 786
           G   GGG  G  G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +1

Query: 721 PXPPXXPPPXXLPXPPPXXXPPPPPXPXXPXXPPPP 828
           P P   P    L  PP    PP       P   P P
Sbjct: 267 PYPMQRPKSASLSPPPHVYNPPDHIQQATPYSAPGP 302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,648
Number of Sequences: 336
Number of extensions: 5798
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24410188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)