Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_B22
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...   178   7e-46
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...   178   1e-45
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    52   1e-07
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    28   2.0  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    27   3.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.7  

>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =  178 bits (434), Expect = 7e-46
 Identities = 83/120 (69%), Positives = 94/120 (78%)
 Frame = +3

Query: 159 LNMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMII 338
           L++  EQL++L H         GL       ++KLR+AK EAP NEKP  VKTHLRNMII
Sbjct: 35  LDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNMII 94

Query: 339 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRXGIGATHSSRFIPLK 518
           +PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGR GIGATHSSRFIPLK
Sbjct: 95  LPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +2

Query: 98  LKKKRIFRKFTYRGVDLDQLLE 163
           L+KKR FR F YRGV+L+QLL+
Sbjct: 15  LRKKRTFRTFAYRGVELEQLLD 36


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =  178 bits (433), Expect = 1e-45
 Identities = 83/120 (69%), Positives = 94/120 (78%)
 Frame = +3

Query: 159 LNMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMII 338
           L++  EQL++L H         GL       ++KLR+AK EAP NEKP  VKTHLRNMII
Sbjct: 34  LDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTHLRNMII 93

Query: 339 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRXGIGATHSSRFIPLK 518
           +PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGR GIGATHSSRFIPLK
Sbjct: 94  LPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +2

Query: 98  LKKKRIFRKFTYRGVDLDQLLE 163
           L+KKR FR F YRGV+L+QLL+
Sbjct: 14  LRKKRSFRTFAYRGVELEQLLD 35


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 23/49 (46%), Positives = 35/49 (71%)
 Frame = +3

Query: 309 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 455
           +KT +R+  I+P MVG+   ++NGK++  V+I  +MIGH LGEF+ T K
Sbjct: 50  IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 691 PXXPPLXGGVIRPPPXXKXFXXSXPPPPXXXP 786
           P   P+ GG   PPP         PPPP   P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 276 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 377
           K A P++KP +  THL +++I    VG  +  ++
Sbjct: 60  KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFH 93


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 371 NADN*TDHLGNDDHVSQVSLHDLWLLIR 288
           N  N T H+ ++  V +V++HD+W  I+
Sbjct: 18  NVPNETKHIFDEISVKEVAVHDIWKRIQ 45


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 682 PGAPXXPPLXGGVIRPPPXXKXFXXSXPPPPXXXP 786
           P AP  PPL  G+   PP       + PP P   P
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPPA-APAPPPAPAPAP 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,650
Number of Sequences: 5004
Number of extensions: 44009
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)