Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_B21
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           28   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   8.5  

>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 179 WYVLVLVTMSENGYPAXGVMVTW 247
           WYVL+ + MS  G PA  V+ T+
Sbjct: 334 WYVLMALLMSSTGLPAGNVLNTY 356


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/57 (28%), Positives = 19/57 (33%)
 Frame = +1

Query: 736  PXTPXMXSXTXPXPPXPXPXXPPRXXQXPPXEINXPTRIPRHTXSWFXXPPXXPPLP 906
            P  P + S   P P  P    PP         +  PT  P    S    P   PP+P
Sbjct: 1012 PPVPKLSSKAPPVP-LPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -1

Query: 270 SNSDTILSHVTITPXAG*PFSDMVTSTSTYHQPISTV 160
           +NS T+LS  T T       S   T TST H PI TV
Sbjct: 619 TNSSTLLSP-TSTSFTSYTVSATATPTSTSHIPIPTV 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,280
Number of Sequences: 5004
Number of extensions: 26654
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)