Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_B21
         (912 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    34   0.16 
U29096-1|AAA68406.1|  105|Caenorhabditis elegans Neuropeptide-li...    30   2.6  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   4.6  
Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    28   8.1  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    28   8.1  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 20/57 (35%), Positives = 21/57 (36%)
 Frame = +1

Query: 736 PXTPXMXSXTXPXPPXPXPXXPPRXXQXPPXEINXPTRIPRHTXSWFXXPPXXPPLP 906
           P  P   S      P P P  PPR  + PP     P R P    S    PP  PP P
Sbjct: 124 PPPPPRKSRAGGSSPPPPP--PPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSP 178


>U29096-1|AAA68406.1|  105|Caenorhabditis elegans Neuropeptide-like
           protein protein32 protein.
          Length = 105

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 824 GGXWXXRGGXLGKGXGGXG 768
           GG W  RGG  G+G GG G
Sbjct: 76  GGGWGGRGGGWGRGGGGRG 94


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/45 (33%), Positives = 16/45 (35%)
 Frame = +1

Query: 769 PXPPXPXPXXPPRXXQXPPXEINXPTRIPRHTXSWFXXPPXXPPL 903
           P PP P P   P     PP  I  P   P         PP  PP+
Sbjct: 29  PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPM 73


>Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical
           protein K08E3.4 protein.
          Length = 643

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
 Frame = +1

Query: 733 YPXTPXMXSXTXPXPPXPXPXXPPRXXQXPPXEINX---PTRIPRHTXSWFXXPPXXPPL 903
           Y   P   S     PP   P         PP  I+     +++P H  S +  PP  P  
Sbjct: 500 YDAPPVHESFEPAVPPVSAPSHYASQYDAPPEPIDSHSSSSQLPAHIASQYDMPPVMPEE 559

Query: 904 PXF 912
           P F
Sbjct: 560 PVF 562


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/64 (25%), Positives = 19/64 (29%)
 Frame = +1

Query: 715 YXXXCYYPXTPXMXSXTXPXPPXPXPXXPPRXXQXPPXEINXPTRIPRHTXSWFXXPPXX 894
           Y     YP +    +   P PP P P   P   Q    +   P   P          P  
Sbjct: 8   YKSQTTYPESAPAATTPQPPPPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAP 67

Query: 895 PPLP 906
           PP P
Sbjct: 68  PPAP 71


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +1

Query: 736 PXTPXMXSXTXPXPPXPXPXXPPRXXQXPPXEI 834
           P  P + S     PP P P  PP     PP  I
Sbjct: 71  PPPPPLISILQQAPPPPPPPPPPTLKAPPPPPI 103


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
 Frame = +1

Query: 736  PXTPXMXSXTXPXPPXPXPXXPPRXXQXPPXEINXPTRIPRHTXS-WFXXPPXXPPLP 906
            P  P     +    P P P  PP      P  +  P   P    S     PP  PPLP
Sbjct: 1340 PPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPPPPPPLP 1397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,977,064
Number of Sequences: 27780
Number of extensions: 176979
Number of successful extensions: 681
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)