Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_B18
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 56 4e-09
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 56 4e-09
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 56 4e-09
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 40 5e-04
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 35 0.011
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 33 0.033
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 29 0.93
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 29 0.93
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 28 1.2
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 27 2.8
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 26 5.0
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 56.4 bits (130), Expect = 4e-09
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +1
Query: 124 REKTHINIVVIGHVDSGKSTTTGHLIY 204
+EK HIN+VVIGHVDSGKSTTTGHLIY
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIY 29
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +3
Query: 204 QCGGIDXRTIXXFXXEXQENG*XSFXYAW 290
+CGGID RTI F E E G SF YAW
Sbjct: 30 KCGGIDKRTIEKFEKEATELGKGSFKYAW 58
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 56.4 bits (130), Expect = 4e-09
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +1
Query: 124 REKTHINIVVIGHVDSGKSTTTGHLIY 204
+EK HIN+VVIGHVDSGKSTTTGHLIY
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIY 29
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +3
Query: 204 QCGGIDXRTIXXFXXEXQENG*XSFXYAW 290
+CGGID RTI F E E G SF YAW
Sbjct: 30 KCGGIDKRTIEKFEKEATELGKGSFKYAW 58
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 56.4 bits (130), Expect = 4e-09
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +1
Query: 124 REKTHINIVVIGHVDSGKSTTTGHLIY 204
+EK HIN+VVIGHVDSGKSTTTGHLIY
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIY 29
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +3
Query: 204 QCGGIDXRTIXXFXXEXQENG*XSFXYAW 290
+CGGID RTI F E E G SF YAW
Sbjct: 30 KCGGIDKRTIEKFEKEATELGKGSFKYAW 58
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 39.5 bits (88), Expect = 5e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 130 KTHINIVVIGHVDSGKSTTTGHLIY 204
K H+NIV IGHVD+GKST G++++
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILF 260
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 35.1 bits (77), Expect = 0.011
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 118 WAREKTHINIVVIGHVDSGKSTTT 189
+ R+K H+NI IGHVD GK+T T
Sbjct: 47 FVRKKPHVNIGTIGHVDHGKTTLT 70
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 33.5 bits (73), Expect = 0.033
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 130 KTHINIVVIGHVDSGKSTTTGHLIYNV 210
K +++VV GHVDSGKST G +++ +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFEL 201
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 28.7 bits (61), Expect = 0.93
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 142 NIVVIGHVDSGKSTTTGHLIYNVVVLT 222
N+ VI HVD GKST T L+ +++
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIIS 47
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 28.7 bits (61), Expect = 0.93
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 142 NIVVIGHVDSGKSTTTGHLIYNVVVLT 222
N+ VI HVD GKST T L+ +++
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIIS 47
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 142 NIVVIGHVDSGKSTTTGHLIY 204
N+ +I H+D+GK+T T ++Y
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLY 50
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 142 NIVVIGHVDSGKSTTTGHLIY 204
NI + H+DSGK+T T ++Y
Sbjct: 61 NIGISAHIDSGKTTFTERVLY 81
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +1
Query: 142 NIVVIGHVDSGKST-----TTGHLIYNVVVLTNVPSXXSXXRXRKMGXDPSN 282
N ++G D+ T TT + VV T+ P S RK+G DP++
Sbjct: 500 NSAILGTNDAASGTPVPQDTTSTKVSPAVVFTSSPRIFSPQSLRKIGFDPTH 551
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,692
Number of Sequences: 5004
Number of extensions: 28472
Number of successful extensions: 71
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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