Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_B18
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 58 9e-09
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 58 9e-09
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 58 9e-09
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 58 9e-09
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 58 9e-09
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 38 0.006
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 34 0.093
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 34 0.093
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 34 0.093
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.87
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 31 0.87
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 29 2.6
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 29 2.6
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 29 4.6
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 29 4.6
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 28 6.1
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 57.6 bits (133), Expect = 9e-09
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +1
Query: 124 REKTHINIVVIGHVDSGKSTTTGHLIY 204
+EK HINIVVIGHVDSGKSTTTGHLIY
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIY 29
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/29 (62%), Positives = 19/29 (65%)
Frame = +3
Query: 204 QCGGIDXRTIXXFXXEXQENG*XSFXYAW 290
+CGGID RTI F E QE G SF YAW
Sbjct: 30 KCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 57.6 bits (133), Expect = 9e-09
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +1
Query: 124 REKTHINIVVIGHVDSGKSTTTGHLIY 204
+EK HINIVVIGHVDSGKSTTTGHLIY
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIY 29
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/29 (62%), Positives = 19/29 (65%)
Frame = +3
Query: 204 QCGGIDXRTIXXFXXEXQENG*XSFXYAW 290
+CGGID RTI F E QE G SF YAW
Sbjct: 30 KCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 57.6 bits (133), Expect = 9e-09
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +1
Query: 124 REKTHINIVVIGHVDSGKSTTTGHLIY 204
+EK HINIVVIGHVDSGKSTTTGHLIY
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIY 29
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/29 (62%), Positives = 19/29 (65%)
Frame = +3
Query: 204 QCGGIDXRTIXXFXXEXQENG*XSFXYAW 290
+CGGID RTI F E QE G SF YAW
Sbjct: 30 KCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 57.6 bits (133), Expect = 9e-09
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +1
Query: 124 REKTHINIVVIGHVDSGKSTTTGHLIY 204
+EK HINIVVIGHVDSGKSTTTGHLIY
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIY 29
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/29 (62%), Positives = 19/29 (65%)
Frame = +3
Query: 204 QCGGIDXRTIXXFXXEXQENG*XSFXYAW 290
+CGGID RTI F E QE G SF YAW
Sbjct: 30 KCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 57.6 bits (133), Expect = 9e-09
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +1
Query: 124 REKTHINIVVIGHVDSGKSTTTGHLIY 204
+EK HINIVVIGHVDSGKSTTTGHLIY
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIY 29
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/29 (62%), Positives = 19/29 (65%)
Frame = +3
Query: 204 QCGGIDXRTIXXFXXEXQENG*XSFXYAW 290
+CGGID RTI F E QE G SF YAW
Sbjct: 30 KCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/31 (51%), Positives = 26/31 (83%)
Frame = +1
Query: 127 EKTHINIVVIGHVDSGKSTTTGHLIYNVVVL 219
+K IN++V+GHVD+GKST GHL++++ V+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVV 197
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 216 IDXRTIXXFXXEXQENG*XSFXYAW 290
+D RTI F E NG SF YAW
Sbjct: 197 VDSRTIDKFKHEAARNGKASFAYAW 221
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/31 (51%), Positives = 26/31 (83%)
Frame = +1
Query: 127 EKTHINIVVIGHVDSGKSTTTGHLIYNVVVL 219
+K IN++V+GHVD+GKST GHL++++ V+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVV 215
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 216 IDXRTIXXFXXEXQENG*XSFXYAW 290
+D RTI F E NG SF YAW
Sbjct: 215 VDSRTIDKFKHEAARNGKASFAYAW 239
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1
Query: 130 KTHINIVVIGHVDSGKSTTTGHLIY 204
K HIN+V +GHVD+GKST G L++
Sbjct: 107 KEHINMVFVGHVDAGKSTIGGQLMF 131
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 34.3 bits (75), Expect = 0.093
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 124 REKTHINIVVIGHVDSGKSTTT 189
R+K H+N+ IGHVD GK+T T
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLT 66
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 34.3 bits (75), Expect = 0.093
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 124 REKTHINIVVIGHVDSGKSTTT 189
R+K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 34.3 bits (75), Expect = 0.093
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 124 REKTHINIVVIGHVDSGKSTTT 189
R+K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 97 NPVTNQKWAREKTHINIVVIGHVDSGKST 183
NP+T + +R+ T INI IGHV GKST
Sbjct: 28 NPLTEEVISRQAT-INIGTIGHVAHGKST 55
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 142 NIVVIGHVDSGKSTTTGHLIY 204
NI VI HVD+GK+T T L+Y
Sbjct: 27 NIGVIAHVDAGKTTVTERLLY 47
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 121 AREKTHINIVVIGHVDSGKSTTT 189
A K ++N+ IGH+D GK+T T
Sbjct: 40 ATPKINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 121 AREKTHINIVVIGHVDSGKSTTT 189
A K ++N+ IGH+D GK+T T
Sbjct: 40 ATPKINVNVGTIGHIDHGKTTLT 62
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 139 INIVVIGHVDSGKSTTT 189
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 139 INIVVIGHVDSGKSTTT 189
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 124 REKTHINIVVIGHVDSGKSTTTGHLI 201
R++ N+ VI HVD GKST T L+
Sbjct: 15 RKRNIRNMSVIAHVDHGKSTLTDSLV 40
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 124 REKTHINIVVIGHVDSGKSTTTGHLI 201
R++ N+ VI HVD GKST T L+
Sbjct: 15 RKRNIRNMSVIAHVDHGKSTLTDSLV 40
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 142 NIVVIGHVDSGKSTTTGHLIY 204
NI + H+DSGK+T T ++Y
Sbjct: 46 NIGISAHIDSGKTTVTERILY 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,532,281
Number of Sequences: 27780
Number of extensions: 245957
Number of successful extensions: 364
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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