Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_B16
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   4.4  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   5.8  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   5.8  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   7.6  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 392  IWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYXLGDLLDVLKHGRLED-M 216
            +W   +       G+    Y+ + CLTT+   Y S L +  Y    ++    + +LED M
Sbjct: 1787 VWRVSIRDFAEVSGATDSFYMGIMCLTTALCKYHSALLND-YRKSVIMSAWNYIKLEDPM 1845

Query: 215  VKQ 207
            VKQ
Sbjct: 1846 VKQ 1848


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 653 VLWKYYGITVTDDNLVVIDWRKGVRRSLSQNDVMSYFMEDVHLNTYMYYLH 805
           ++ +  G  + D+  V ID  KG+ R    ND  +  +   HL+T M  LH
Sbjct: 375 IIEELIGEEIIDETDVYIDVHKGLPRVGENNDFWNRMLHRSHLST-MAALH 424


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -1

Query: 398 SSIWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYXLGDL 252
           SS  +S ++T +     + I Y+S+NCL  + +  L   F + + +  L
Sbjct: 314 SSSRNSWIFTLLLTFTQLTIFYLSLNCLIENPYRMLRNTFPIWFIMQTL 362


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +2

Query: 632 LKPPRTRVLWKYY-GITVTDDNLVVIDWR 715
           L P      W Y  GI V DD + + DWR
Sbjct: 308 LHPSAFLQAWNYLSGIAVLDDRIAMHDWR 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,080
Number of Sequences: 5004
Number of extensions: 58921
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)