Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_B15
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   0.99 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   1.6  
SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomy...    28   1.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   3.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   6.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect(2) = 0.99
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 740  PXPPPPXXPPPPXA 781
            P PPP   PPPP A
Sbjct: 1707 PPPPPMSVPPPPSA 1720



 Score = 21.4 bits (43), Expect(2) = 0.99
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = +2

Query: 881  PPPXXPXXXKAXXFPXPPPXP 943
            PPP  P          PPP P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLP 1736


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect(2) = 1.6
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 881 PPPXXPXXXKAXXFPXPPPXP 943
           PPP  P   +    P PPP P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 21.8 bits (44), Expect(2) = 1.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 737 IPXPPPPXXPPPP 775
           +P   PP  PPPP
Sbjct: 4   LPPGNPPPPPPPP 16


>SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 102

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 315 RFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHI 413
           + YTD++            +S+ FIASVF+LHI
Sbjct: 59  KLYTDEASGFKVDPVVVMVLSVGFIASVFLLHI 91


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 665 PXXXXPPXXXGGXAXXXPFXXGGXIPXPPPPXXPPP 772
           P    PP    G     P   G     PPPP  PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.4 bits (53), Expect(2) = 2.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 881 PPPXXPXXXKAXXFPXPPPXP 943
           PPP  P    A   P PPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 20.6 bits (41), Expect(2) = 2.2
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +2

Query: 737 IPXPPPPXXPPPPXA 781
           +P P P   P PP A
Sbjct: 741 VPTPAPAPIPVPPPA 755


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 3.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 749 PPPXXPPPP 775
           PPP  PPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 22.2 bits (45), Expect(2) = 3.6
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +2

Query: 881 PPPXXPXXXKAXXFPXPPPXPXL 949
           PP   P        P PPP P L
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTL 246


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 665  PXXXXPPXXXGGXAXXXPFXXGGXIPXPPPPXXPPPP 775
            P    PP      A   P    G  P PPP   PP P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 731 GXIPXPPPPXXPPPP 775
           G +P  PPP  PPPP
Sbjct: 939 GVMPAFPPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,129
Number of Sequences: 5004
Number of extensions: 34282
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)